HOVERGEN is a database of homologous vertebrate genes that allows one to select sets of homologous genes among vertebrate species, and to visualize multiple alignments and phylogenetic trees.

Prefix

hovergen

Keywords

dna gene life science protein

Links

Homepage

Contact

Laurent Duret   0000-0003-2836-3463

Pattern for Local Unique Identifiers

Local identifiers in Homologous Vertebrate Genes Database should match this regular expression:
^HBG\d+$

Example Local Unique Identifier

HBG004341   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Homologous Vertebrate Genes Database should match this regular expression:
^hovergen:HBG\d+$

Example CURIE

hovergen:HBG004341

Publications

2005 Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for hovergen with 2 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE hovergen:HBG004341 is used to demonstrate the provides available for hovergen. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Additional providers curated in the Bioregistry are listed here.