Registry Homologous Vertebrate Genes Database

HOVERGEN is a database of homologous vertebrate genes that allows one to select sets of homologous genes among vertebrate species, and to visualize multiple alignments and phylogenetic trees.

dna gene life science protein
Laurent Duret   0000-0003-2836-3463
Pattern for Local Unique Identifiers

Local identifiers in Homologous Vertebrate Genes Database should match this regular expression:

Example Local Unique Identifier
HBG004341   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Homologous Vertebrate Genes Database should match this regular expression:

Example CURIE
2005 Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.
Metaregistry Homologous Vertebrate Genes Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for hovergen with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext HOVERGEN
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.dg1f0e logo miriam hovergen
N2T Name-to-Thing logo n2t hovergen
Prefix Commons Prefix Commons logo prefixcommons hovergen

Providers are various services that resolve CURIEs to URLs. The example CURIE hovergen:HBG004341 is used to demonstrate the provides available for hovergen. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Homologous Vertebrate Genes Database hovergen
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF