ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.

expression functional genomics microarray nucleotide
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in ArrayExpress should match this regular expression:

Example Local Unique Identifier
E-MEXP-1712   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from ArrayExpress should match this regular expression:

Example CURIE
Metaregistry ArrayExpress

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext ARRAYEXPRESS
Cellosaurus Cellosaurus Registry logo cellosaurus ArrayExpress
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.6k0kwd
Integbio Integbio logo integbio nbdc00009 logo miriam arrayexpress
N2T Name-to-Thing logo n2t arrayexpress
Prefix Commons Prefix Commons logo prefixcommons arrayexpress
re3data Registry of Research Data Repositories logo re3data r3d100010222

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier E-MEXP-1712 is used to demonstrate the providers available for ArrayExpress. A guide for curating additional providers can be found here.

Name Metaprefix URI
ArrayExpress arrayexpress
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF
omicsdi ArrayExpress through OmicsDI