The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products.
- Prefix
cgd- Keywords
- bibliography/documents dna eukaryotic genome genome/gene health/disease interaction/pathway nucleotide organism-specific databases protein repository sequence
- Links
- Homepage
- Publications
- 2016 The Candida Genome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data
- 2011 The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata
- https://bioregistry.io/pubmed:19808938
- https://bioregistry.io/pubmed:19577928
- https://bioregistry.io/pubmed:19465905
- https://bioregistry.io/pubmed:17090582
- https://bioregistry.io/pubmed:16879419
- 2005 The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in Candida Genome Database should match this regular expression:
^CAL\d{7}$ - Example Local Unique Identifier
- CAL0003079 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Candida Genome Database should match this regular expression:
^cgd:CAL\d{7}$ - Example CURIE
- cgd:CAL0003079
Contacts
- Contact
-
Gavin Sherlock
0000-0002-1692-4983
Metaregistry Candida Genome Database
The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for this resource with 4 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
CGD
|
|
GO
|
go |
CGD
|
|
Integbio
|
integbio |
nbdc00391
|
|
Identifiers.org
|
miriam |
cgd
|
|
N2T
|
n2t |
cgd
|
|
NCBI
|
ncbi |
CGD
|
|
Prefix Commons
|
prefixcommons |
cgd
|
|
re3data
|
re3data |
r3d100010617
|
|
UniProt
|
uniprot |
DB-0126
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier CAL0003079 is used to demonstrate the providers
available for Candida Genome Database. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Code | Name | URL |
|---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/cgd:CAL0003079 |