Registry Plant Transcription Factor Database

The Plant TF database (PlantTFDB) systematically identifies transcription factors for plant species. It includes annotation for identified TFs, including information on expression, regulation, interaction, conserved elements, phenotype information. It also provides curated descriptions and cross-references to other life science databases, as well as identifying evolutionary relationship among identified factors.

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Plant Transcription Factor Database should match this regular expression:

Example Local Unique Identifier
Ath_AT1G01030.1   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Plant Transcription Factor Database should match this regular expression:

Example CURIE
Metaregistry Plant Transcription Factor Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for planttfdb with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext PLANTTFDB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.ex3fqk logo miriam planttfdb
Name-to-Thing Name-to-Thing logo n2t planttfdb
Prefix Commons prefixcommons planttfdb
Registry of Research Data Repositories re3data r3d100011301

Providers are various services that resolve CURIEs to URLs. The example CURIE planttfdb:Ath_AT1G01030.1 is used to demonstrate the provides available for planttfdb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Plant Transcription Factor Database planttfdb
Bioregistry bioregistry miriam
Name-to-Thing n2t