Logo for Protein Ontology The PRotein Ontology (PRO) has been designed to describe the relationships of proteins and protein evolutionary classes, to delineate the multiple protein forms of a gene locus (ontology for protein forms), and to interconnect existing ontologies.

Prefix
pr
Preferred Prefix
PR
Alternative Prefixes
PR PRO
Keywords
annotation biocuration biology data model glycosylation methylation obo ontology phosphorylation protein protein acetylation protein-containing complex ptm site prediction
Version
70.0
License
CC-BY-4.0
Links
Homepage Repository OBO OWL
Contact
Darren Natale   0000-0001-5809-9523   nataled
Pattern for Local Unique Identifiers

Local identifiers in Protein Ontology should match this regular expression:
^(?:\d{9}|[OPQ][0-9][A-Z0-9]{3}[0-9](?:-\d+)?|[A-NR-Z][0-9](?:[A-Z][A-Z0-9]{2}[0-9]){1,2}(?:-\d+)?)$

Example Local Unique Identifiers
000000024   Resolve
P0DP23   Resolve
Q15796   Resolve
Q15796-1   Resolve
A0A0G2QC33   Resolve
A0A0G2QC33-2   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Protein Ontology should match this regular expression:
^PR:(?:\d{9}|[OPQ][0-9][A-Z0-9]{3}[0-9](?:-\d+)?|[A-NR-Z][0-9](?:[A-Z][A-Z0-9]{2}[0-9]){1,2}(?:-\d+)?)$

Example CURIEs
PR:000000024
PR:P0DP23
PR:Q15796
PR:Q15796-1
PR:A0A0G2QC33
PR:A0A0G2QC33-2
MIRIAM Namespace Embedded in LUI
The legacy MIRIAM standard for generating CURIEs with this resource annotates the namespaceEmbeddedInLUI as true. This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known as a banana) and therefore look like a CURIE. For Protein Ontology, the banana looks like PR:. Therefore, you may see local unique identifiers for this resource that look like PR:000000024 (instead of the canonical form 000000024) and CURIEs for this resource that look like PR:PR:000000024 (instead of the canonical form PR:000000024). The Bioregistry will automatically strip off the banana when standardizing local unique identifiers and CURIEs.
Publications
References
GitHub Issue https://github.com/biopragmatics/bioregistry/issues/959
Contributors
Ontology

A summary of the relations in the Bioregistry schema can be found here.

Appears In (5) (bioregistry.schema:0000018 )
CHIRO CL PCL SCDO UBERON
Metaregistry Protein Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 15 mappings to external registries for this resource with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL AberOWL logo aberowl PR
AgroPortal AgroPortal logo agroportal PR
BioContext biocontext PR
BioPortal BioPortal Prefixes logo bioportal PR
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.4ndncv
GO Gene Ontology Registry logo go PR
Integbio Integbio logo integbio nbdc01630
Identifiers.org Identifiers.org logo miriam pr
N2T Name-to-Thing logo n2t pr
OBO Foundry OBO Foundry logo obofoundry pr
OLS Ontology Lookup Service logo ols pr
OntoBee OntoBee logo ontobee PR
Prefix Commons Prefix Commons logo prefixcommons pr
UniProt UniProt Cross-ref database logo uniprot DB-0181
Wikidata Wikidata Property logo wikidata P4926
RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/PR_$1

Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 000000024 is used to demonstrate the providers available for Protein Ontology. A guide for curating additional providers can be found here.

Name Metaprefix URI
Protein Ontology pr http://purl.obolibrary.org/obo/PR_000000024
Protein Ontology (RDF) rdf http://purl.obolibrary.org/obo/PR_000000024
Bioregistry bioregistry https://bioregistry.io/pr:000000024
Identifiers.org miriam https://identifiers.org/PR:000000024
OBO Foundry obofoundry http://purl.obolibrary.org/obo/PR_000000024
Ontology Lookup Service ols https://www.ebi.ac.uk/ols4/ontologies/pr/terms?iri=http://purl.obolibrary.org/obo/PR_000000024
Name-to-Thing n2t https://n2t.net/pr:000000024
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/PR/?p=classes&conceptid=http://purl.obolibrary.org/obo/PR_000000024
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
CURATOR_REVIEW Protein Ontology at Georgetown https://proconsortium.org/app/entry/PR:000000024
bio2rdf Bio2RDF http://bio2rdf.org/pr:000000024
ontorat OntoRat http://purl.obolibrary.org/obo/vo/ontorat/PR_000000024