BindingDB is the first public database of protein-small molecule affinity data.

chemistry computational chemistry drug discovery interaction life science medicinal chemistry protein
Michael K. Gilson   0000-0002-3375-1738
Pattern for Local Unique Identifiers

Local identifiers in BindingDB should match this regular expression:

Example Local Unique Identifier
e999   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from BindingDB should match this regular expression:

Example CURIE
Metaregistry BindingDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext BINDINGDB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.3b36hk logo miriam bindingdb
N2T Name-to-Thing logo n2t bindingdb
Pathguide Pathguide logo pathguide 50
Prefix Commons Prefix Commons logo prefixcommons bindingdb
re3data Registry of Research Data Repositories logo re3data r3d100012074
UniProt UniProt Cross-ref database logo uniprot DB-0127

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier e999 is used to demonstrate the providers available for BindingDB. A guide for curating additional providers can be found here.

Name Metaprefix URI
BindingDB bindingdb
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF