BindingDB is the first public database of protein-small molecule affinity data.

chemistry computational chemistry drug discovery interaction life science medicinal chemistry protein
Michael K. Gilson   0000-0002-3375-1738
Pattern for Local Unique Identifiers

Local identifiers in BindingDB should match this regular expression:

Example Local Unique Identifier
e999   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from BindingDB should match this regular expression:

Example CURIE
Metaregistry BindingDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext BINDINGDB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.3b36hk logo miriam bindingdb
N2T Name-to-Thing logo n2t bindingdb
Pathguide Pathguide logo pathguide 50
Prefix Commons Prefix Commons logo prefixcommons bindingdb
re3data Registry of Research Data Repositories logo re3data r3d100012074
UniProt UniProt Cross-ref database logo uniprot DB-0127

Providers are various services that resolve CURIEs to URLs. The example CURIE bindingdb:e999 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
BindingDB bindingdb
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF