Registry BindingDB
BindingDB is the first public database of protein-small molecule affinity data.
- Prefix
bindingdb- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in BindingDB should match this regular expression:
^\w\d+$ - Example Local Unique Identifier
- e999 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from BindingDB should match this regular expression:
^bindingdb:\w\d+$ - Example CURIE
- bindingdb:e999
- Publications
- 2006 BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities.
Metaregistry BindingDB
The metaregistry provides mappings between the Bioregistry and other registries. There are
7 mappings to external registries for bindingdb with
3 unique external prefixes.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
| BioContext | biocontext |
BINDINGDB
|
FAIRSharing
|
fairsharing |
FAIRsharing.3b36hk
|
Identifiers.org
|
miriam |
bindingdb
|
Name-to-Thing
|
n2t |
bindingdb
|
| Prefix Commons | prefixcommons |
bindingdb
|
| Registry of Research Data Repositories | re3data |
r3d100012074
|
| UniProt Cross-ref database | uniprot |
BindingDB
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
bindingdb:e999
is used to demonstrate the provides available for
bindingdb. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| BindingDB | bindingdb |
http://www.bindingdb.org/compact/e999 |
| Bioregistry | bioregistry |
https://bioregistry.io/bindingdb:e999 |
| Identifiers.org | miriam |
https://identifiers.org/bindingdb:e999 |
| Name-to-Thing | n2t |
https://n2t.net/bindingdb:e999 |