Registry PRIDE Controlled Vocabulary

The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references experiments and assays.

Prefix
pride
Links
Homepage Repository OWL
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in PRIDE Controlled Vocabulary should match this regular expression:
^\d{7}$

Example Local Unique Identifier
0000006   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from PRIDE Controlled Vocabulary should match this regular expression:
^pride:\d{7}$

Example CURIE
pride:0000006
Publications
Metaregistry PRIDE Controlled Vocabulary

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for pride with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL aberowl PRIDE
BioContext biocontext PRIDE
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.e1byny
Identifiers.org Identifiers.org logo miriam pride
Name-to-Thing Name-to-Thing logo n2t pride
Ontology Lookup Service Ontology Lookup Service logo ols pride
Prefix Commons prefixcommons pride
Registry of Research Data Repositories re3data r3d100010137
UniProt Cross-ref database uniprot DB-0130
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE pride:0000006 is used to demonstrate the provides available for pride. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
PRIDE Controlled Vocabulary pride http://purl.obolibrary.org/obo/PRIDE_0000006
Bioregistry bioregistry https://bioregistry.io/pride:0000006
Identifiers.org miriam https://identifiers.org/pride:0000006
Name-to-Thing n2t https://n2t.net/pride:0000006