The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references experiments and assays.

ontology protein proteomics
Homepage Repository OWL
Yasset Perez-Riverol   0000-0001-6579-6941   ypriverol
Pattern for Local Unique Identifiers

Local identifiers in PRIDE Controlled Vocabulary should match this regular expression:

Example Local Unique Identifier
0000006   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from PRIDE Controlled Vocabulary should match this regular expression:

Example CURIE

A summary of the relations in the Bioregistry schema can be found here.

In Collection
Resources mentioned in "Sharing biological data: why, when, and how"
Metaregistry PRIDE Controlled Vocabulary

The metaregistry provides mappings between the Bioregistry and other registries. There are 10 mappings to external registries for this resource with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL AberOWL logo aberowl PRIDE
BioContext biocontext PRIDE
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.e1byny
Integbio Integbio logo integbio nbdc00630 logo miriam pride
N2T Name-to-Thing logo n2t pride
OLS Ontology Lookup Service logo ols pride
Prefix Commons Prefix Commons logo prefixcommons pride
re3data Registry of Research Data Repositories logo re3data r3d100010137
UniProt UniProt Cross-ref database logo uniprot DB-0130

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0000006 is used to demonstrate the providers available for PRIDE Controlled Vocabulary. A guide for curating additional providers can be found here.

Name Metaprefix URI
PRIDE Controlled Vocabulary pride
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF