The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references experiments and assays.
- Prefix
pride- Keywords
- ontology protein proteomic databases repository
- Version
- 2026-03-05
- License
- http://www.ebi.ac.uk/Information/termsofuse.html
- Links
- Homepage Repository OWL
- Publications
- 2022 The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
- 2019 The PRIDE database and related tools and resources in 2019: improving support for quantification data
- 2015 2016 update of the PRIDE database and its related tools
- 2014 How to submit MS proteomics data to ProteomeXchange via the PRIDE database
- 2014 ProteomeXchange provides globally coordinated proteomics data submission and dissemination
- 2012 The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013
- https://bioregistry.io/pubmed:19906717
- 2008 Using the Proteomics Identifications Database (PRIDE)
- 2007 PRIDE: new developments and new datasets
- 2006 PRIDE: a public repository of protein and peptide identifications for the proteomics community
- 2005 PRIDE: the proteomics identifications database
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in Proteomics Identification Database Ontology should match this regular expression:
^\d{7}$ - Example Local Unique Identifier
- 0000006 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Proteomics Identification Database Ontology should match this regular expression:
^pride:\d{7}$ - Example CURIE
- pride:0000006
Contacts
- Contact
-
Yasset Perez-Riverol
0000-0001-6579-6941
ypriverol
- Identifier Space Owner
-
European Bioinformatics Institute
Ontology
A summary of the relations in the Bioregistry schema can be found here.
- In Collection (1)
- Resources mentioned in "Sharing biological data: why, when, and how"
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 9 mappings to external registries with 4 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
AberOWL
|
aberowl |
PRIDE
|
|
| BioContext | biocontext |
PRIDE
|
|
Integbio
|
integbio |
nbdc00312
|
|
Identifiers.org
|
miriam |
pride
|
|
N2T
|
n2t |
pride
|
|
OLS
|
ols |
pride
|
|
Prefix Commons
|
prefixcommons |
pride
|
|
re3data
|
re3data |
r3d100010137
|
|
UniProt
|
uniprot |
DB-0130
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 0000006 is used to demonstrate the providers
available for Proteomics Identification Database Ontology. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| Proteomics Identification Database Ontology | pride |
http://purl.obolibrary.org/obo/PRIDE_0000006 |
| Bioregistry | bioregistry |
https://bioregistry.io/pride:0000006 |
| Identifiers.org | miriam |
https://identifiers.org/pride:0000006 |
| Name-to-Thing | n2t |
https://n2t.net/pride:0000006 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/pride:0000006 |