The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references experiments and assays.
- Prefix
pride- Keywords
- ontology protein proteomics
- Links
- Homepage Repository OWL @pride_ebi
- Contact
- Yasset Perez-Riverol 0000-0001-6579-6941 ypriverol
- Pattern for Local Unique Identifiers
-
Local identifiers in PRIDE Controlled Vocabulary should match this regular expression:
^\d{7}$ - Example Local Unique Identifier
- 0000006 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from PRIDE Controlled Vocabulary should match this regular expression:
^pride:\d{7}$ - Example CURIE
- pride:0000006
- Publications
-
- 2022 The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
- 2019 The PRIDE database and related tools and resources in 2019: improving support for quantification data
- 2015 2016 update of the PRIDE database and its related tools
- 2014 How to submit MS proteomics data to ProteomeXchange via the PRIDE database
- 2014 ProteomeXchange provides globally coordinated proteomics data submission and dissemination
- 2012 The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013
- 2008 Using the Proteomics Identifications Database (PRIDE)
- 2007 PRIDE: new developments and new datasets
- 2006 PRIDE: a public repository of protein and peptide identifications for the proteomics community
- 2005 PRIDE: the proteomics identifications database
Metaregistry PRIDE Controlled Vocabulary
The metaregistry provides mappings between the Bioregistry and other registries. There are 10 mappings to external registries for this resource with 5 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
AberOWL
|
aberowl |
PRIDE
|
|
| BioContext | biocontext |
PRIDE
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.e1byny
|
|
Integbio
|
integbio |
nbdc00630
|
|
Identifiers.org
|
miriam |
pride
|
|
N2T
|
n2t |
pride
|
|
OLS
|
ols |
pride
|
|
Prefix Commons
|
prefixcommons |
pride
|
|
re3data
|
re3data |
r3d100010137
|
|
UniProt
|
uniprot |
DB-0130
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
pride:0000006
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| PRIDE Controlled Vocabulary | pride |
http://purl.obolibrary.org/obo/PRIDE_0000006 |
| Bioregistry | bioregistry |
https://bioregistry.io/pride:0000006 |
| Identifiers.org | miriam |
https://identifiers.org/pride:0000006 |
| Name-to-Thing | n2t |
https://n2t.net/pride:0000006 |
Extra Providers
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/pride:0000006 |