Collections WikiPathways Resources
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A collection containing the WikiPathways prefixes

Identifier
0000048
Maintainers
Egon Willighagen   ORCiD logo 0000-0001-7542-0286   egonw
Marvin Martens   ORCiD logo 0000-0003-2230-0840   marvinm2
Javier Millán Acosta   ORCiD logo 0000-0001-5608-781X   jmillanacosta
Contributors
Charles Tapley Hoyt   ORCiD logo 0000-0003-4423-4370   cthoyt
Size
78
References
https://github.com/biopragmatics/bioregistry/issues/2204
Downloads
AberOWL AgroPortal BARTOC BioContext BiodivPortal Biolink BioPortal Bioregistry Cellosaurus CHEMINF CropOCT EcoPortal EDAM FAIRsharing GO HL7 Integbio LOC LOV Identifiers.org namespace N2T NCBI OBO Foundry ontology OLS OntoBee Pathguide Prefix.cc Prefix Commons re3data RRID TIB-TS TogoID Ontology UniProt Wikidata (E) Wikidata Zazuko OLS Configurations
Prefix Name License Download
ac Activity Streams
aop AOPWiki
aop.events AOPWiki (Key Event)
aop.relationships AOPWiki (Key Event Relationship)
aop.stressor AOPWiki (Stressor)
aopo Adverse Outcome Pathway Ontology Apache-2.0
bioregistry Bioregistry CC0-1.0
cas Chemical Abstracts Service Registry Number
chebi Chemical Entities of Biological Interest CC-BY-4.0
chembl.compound ChEMBL Compound CC-BY-SA-3.0
cheminf Chemical Information Ontology CC0-1.0
chemspider ChemSpider Custom
cl Cell Ontology CC-BY-4.0
comptox DSSTox substance
dbpedia.property DBPedia Property
dbpedia.resource DBPedia Resource
dc Dublin Core Elements (1.1) Deprecated
dcterms Dublin Core Metadata Initiative Terms CC-BY-4.0
drugbank DrugBank Custom
edam EDAM Ontology CC-BY-SA-4.0
efo Experimental Factor Ontology Apache-2.0
ensembl Ensembl Gene Custom
fma Foundational Model of Anatomy Deprecated CC-BY-4.0
foaf Friend of a Friend CC-BY-1.0
formats File Formats
geo Gene Expression Omnibus Custom
geosparql GeoSPARQL Apache-2.0
geosparql.function GeoSPARQL Function
geosparql.rule GeoSPARQL Rule
go Gene Ontology CC-BY-4.0
gpml WikiPathways GPML Vocabulary
First Party 		CC0-1.0
gr GoodRelations
hgnc HUGO Gene Nomenclature Committee CC0-1.0
hmdb Human Metabolome Database Custom
hp Human Phenotype Ontology hpo
ido Infectious Disease Ontology CC-BY-3.0
inchikey InChIKey
kegg.compound KEGG Compound
ldp Linked Data Platform Vocabulary
lipidmaps LIPID MAPS Custom
math Math Vocabulary
mesh Medical Subject Headings CC0-1.0
mf Mental Functioning Ontology CC-BY-3.0
mi Molecular Interactions Controlled Vocabulary CC-BY-4.0
mmo Measurement method ontology CC0-1.0
mp Mammalian Phenotype Ontology CC-BY-4.0
nbo Neuro Behavior Ontology CC-BY-3.0
ncbigene NCBI Gene
ncbitaxon NCBI Taxonomy CC0-1.0
ncit National Cancer Institute Thesaurus CC-BY-4.0
oa Web Annotation Ontology
obo Open Biological and Biomedical Ontologies CC-BY-4.0
ogc.sf Open Geospatial Consortium Simple Features Vocabulary
owl Web Ontology Language
pato Phenotype And Trait Ontology CC-BY-3.0
pav Provenance, Authoring, and Versioning Vocabulary Apache-2.0
pco Population and Community Ontology CC0-1.0
pr Protein Ontology CC-BY-4.0
prov PROV Namespace W3C-20150513
pubchem.compound PubChem compound
pubmed PubMed
rbo Radiation Biology Ontology CC-BY-3.0
rdf Resource Description Framework
rdfa RDFa Vocabulary for Term and Prefix Assignment, and for Processor Graph Reporting
rdfs RDF Schema
sd SPARQL 1.1 Service Description
sh Shapes Constraint Language W3C-20150513
sioc.core Semantically-Interlinked Online Communities Core Ontology CC-BY-1.0
skos Simple Knowledge Organization System W3C-2023
stat POSIX Statistics Operations
uberon Uber Anatomy Ontology CC-BY-3.0
uniprot UniProt Protein CC-BY-4.0
vcard Virtual Contact File
void Vocabulary of Interlinked Datasets
vt Vertebrate trait ontology CC-BY-4.0
wikidata Wikidata CC0-1.0
xml Extensible Markup Language
xsd XML Schema Definition
Indirect Dependencies
Prefix Name
ro Relation Ontology
bfo Basic Formal Ontology
iao Information Artifact Ontology