The Gene Expression Omnibus (GEO) is a gene expression repository providing a curated, online resource for gene expression data browsing, query and retrieval.

comparative genomics epigenomics gene expression genome genomics life science omics ontology phenomics transcriptomics
Homepage OWL
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in NCBI Gene Expression Omnibus should match this regular expression:

Example Local Unique Identifier
GDS1234   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from NCBI Gene Expression Omnibus should match this regular expression:

Example CURIE
Metaregistry NCBI Gene Expression Omnibus

The metaregistry provides mappings between the Bioregistry and other registries. There are 10 mappings to external registries for geo with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL aberowl GEO
BioContext biocontext GEO
Cellosaurus Registry cellosaurus GEO
EDAM Ontology edam 1147
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.5hc8vt
Gene Ontology Registry go GEO logo miriam geo
Name-to-Thing Name-to-Thing logo n2t geo
Prefix Commons prefixcommons geo
Registry of Research Data Repositories re3data r3d100010283

Providers are various services that resolve CURIEs to URLs. The example CURIE geo:GDS1234 is used to demonstrate the provides available for geo. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
NCBI Gene Expression Omnibus geo
Bioregistry bioregistry miriam
Name-to-Thing n2t