Registry NCBI Gene Expression Omnibus

The Gene Expression Omnibus (GEO) is a gene expression repository providing a curated, online resource for gene expression data browsing, query and retrieval.

Prefix
geo
Links
Homepage OWL
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in NCBI Gene Expression Omnibus should match this regular expression:
^G(PL|SM|SE|DS)\d+$

Example Local Unique Identifier
GDS1234   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from NCBI Gene Expression Omnibus should match this regular expression:
^geo:G(PL|SM|SE|DS)\d+$

Example CURIE
geo:GDS1234
Publications
2002 Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.
Metaregistry NCBI Gene Expression Omnibus

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for geo with 3 unique external prefixes.

Registry Name Metaprefix External Prefix
AberOWL aberowl GEO
BioContext biocontext GEO
Cellosaurus Registry cellosaurus GEO
EDAM Ontology edam 1147
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.27rndz
Gene Ontology Registry go GEO
Identifiers.org Identifiers.org logo miriam geo
Name-to-Thing Name-to-Thing logo n2t geo
Prefix Commons prefixcommons geo
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE geo:GDS1234 is used to demonstrate the provides available for geo. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
NCBI Gene Expression Omnibus geo https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GDS1234
Bioregistry bioregistry https://bioregistry.io/geo:GDS1234
Identifiers.org miriam https://identifiers.org/geo:GDS1234
Name-to-Thing n2t https://n2t.net/geo:GDS1234