The Gene Expression Omnibus (GEO) is a gene expression repository providing a curated, online resource for gene expression data browsing, query and retrieval.

comparative genomics epigenomics gene expression genome genomics life science omics phenomics transcriptomics
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in NCBI Gene Expression Omnibus should match this regular expression:

Example Local Unique Identifier
GDS1234   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from NCBI Gene Expression Omnibus should match this regular expression:

Example CURIE

A summary of the relations in the Bioregistry schema can be found here.

In Collection
Resources mentioned in "Sharing biological data: why, when, and how"
Metaregistry NCBI Gene Expression Omnibus

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for this resource with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
Cellosaurus Cellosaurus Registry logo cellosaurus GEO
EDAM EDAM Ontology logo edam 1147
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.5hc8vt
GO Gene Ontology Registry logo go GEO
Integbio Integbio logo integbio nbdc00080 logo miriam geo
N2T Name-to-Thing logo n2t geo
Prefix Commons Prefix Commons logo prefixcommons geo
re3data Registry of Research Data Repositories logo re3data r3d100010283

Providers are various services that resolve CURIEs to URLs. The example CURIE geo:GDS1234 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
NCBI Gene Expression Omnibus geo
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF