The Gene Expression Omnibus (GEO) is a gene expression repository providing a curated, online resource for gene expression data browsing, query and retrieval.

Prefix

geo

Keywords

comparative genomics epigenomics gene expression genome genomics life science omics ontology phenomics transcriptomics

Links

Homepage OWL

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in NCBI Gene Expression Omnibus should match this regular expression:
^G(PL|SM|SE|DS)\d+$

Example Local Unique Identifier

GDS1234   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from NCBI Gene Expression Omnibus should match this regular expression:
^geo:G(PL|SM|SE|DS)\d+$

Example CURIE

geo:GDS1234

Publications

• 2012 NCBI GEO: archive for functional genomics data sets--update.
• 2006 NCBI GEO standards and services for microarray data.
• 2002 Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.
• 2000 One-stop shop for microarray data.
• 2012 MINSEQE: Minimum Information about a high-throughput Nucleotide SeQuencing Experiment - a proposal for standards in functional genomic data reporting

In Collection

Resources mentioned in "Sharing biological data: why, when, and how"

The metaregistry provides mappings between the Bioregistry and other registries. There are 10 mappings to external registries for geo with 4 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE geo:GDS1234 is used to demonstrate the provides available for geo. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Additional providers curated in the Bioregistry are listed here.