Registry Infectious Disease Ontology

Infectious Disease Ontology holds entities relevant to both biomedical and clinical aspects of most infectious diseases.

Prefix: ido
Preferred Prefix: IDO
Keywords: biomedical science molecular infection biology obo ontology preclinical studies
Version: 2017-11-03
License: CC-BY-3.0
Links: Homepage Repository OWL
Contact: Lindsay Cowell 0000-0003-1617-8244 lgcowell
Pattern for Local Unique Identifiers: Local identifiers in Infectious Disease Ontology should match this regular expression:
^[0-9]+$
Example Local Unique Identifier: 0000504 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Infectious Disease Ontology should match this regular expression:
^ido:[0-9]+$
Example CURIE: ido:0000504
Publications: 2021 The Infectious Disease Ontology in the age of COVID-19.

Ontology

Appears In (1): SCDO

Metaregistry Infectious Disease Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for ido with 2 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`IDO`
BioContext	`biocontext`	`IDO`
BioPortal Prefixes	`bioportal`	`IDO`
FAIRSharing	`fairsharing`	`FAIRsharing.aae3v6`
Identifiers.org	`miriam`	`ido`
Name-to-Thing	`n2t`	`ido`
OBO Foundry	`obofoundry`	`ido`
Ontology Lookup Service	`ols`	`ido`
OntoBee	`ontobee`	`IDO`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE ido:0000504 is used to demonstrate the provides available for ido. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
Infectious Disease Ontology	`ido`	https://www.ebi.ac.uk/ols/ontologies/ido/terms?obo_id=IDO:0000504
Bioregistry	`bioregistry`	https://bioregistry.io/ido:0000504
Identifiers.org	`miriam`	https://identifiers.org/ido:0000504
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/IDO_0000504
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/ido/terms?iri=http://purl.obolibrary.org/obo/IDO_0000504
Name-to-Thing	`n2t`	https://n2t.net/ido:0000504
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/IDO/?p=classes&conceptid=http://purl.obolibrary.org/obo/IDO_0000504
None	`obo.1`	http://purl.obolibrary.org/obo/ido.owl/IDO_0000504

Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code	Name	URL
`obo.1`	Nonstandard OBO PURL	http://purl.obolibrary.org/obo/ido.owl/IDO_0000504

Get the version:

>>> import bioregistry as br
>>> br.get_version("ido")
'2017-11-03'

Get the license:

>>> import bioregistry as br
>>> br.get_license("ido")
'CC-BY-3.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("ido")
'http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("ido")
'https://github.com/infectious-disease-ontology/infectious-disease-ontology'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("ido")
'http://purl.obolibrary.org/obo/ido.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("ido")
'Lindsay Cowell'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("ido")
'Lindsay.Cowell@utsouthwestern.edu'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("ido")
'lgcowell'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("ido")
'0000-0003-1617-8244'