Registry Phenotype And Trait Ontology

PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype annotation.

Prefix
pato
Preferred Prefix
PATO
Version
2022-08-31
License
CC BY 3.0
Links
Homepage Repository OBO OWL OBO JSON
Contact
George Gkoutos   0000-0002-2061-091X   gkoutos
Pattern for Local Unique Identifiers

Local identifiers in Phenotype And Trait Ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier
0001998   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Phenotype And Trait Ontology should match this regular expression:
^pato:\d{7}$

Example CURIE
pato:0001998
MIRIAM Namespace Embedded in LUI
The legacy MIRIAM standard for generating CURIEs with this resource includes the namespaceEmbeddedInLUI as true. The actual part that gets prefixed before the local unique identifier regex, otherwise known as the banana, is PATO:. Therefore, you might see local unique identifiers written out as CURIEs.
Publications
Metaregistry Phenotype And Trait Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 12 mappings to external registries for pato with 2 unique external prefixes.

Registry Name Metaprefix External Prefix
AberOWL aberowl PATO
AgroPortal agroportal PATO
BioContext biocontext PATO
BioPortal Prefixes bioportal PATO
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.ezwdhz
Gene Ontology Registry go PATO
Identifiers.org Identifiers.org logo miriam pato
Name-to-Thing Name-to-Thing logo n2t pato
OBO Foundry OBO Foundry logo obofoundry pato
Ontology Lookup Service Ontology Lookup Service logo ols pato
OntoBee ontobee PATO
Prefix Commons prefixcommons pato
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
purl Legacy PURL http://purl.org/obo/owl/PATO#PATO_0001998