Registry Phenotype And Trait Ontology

PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype annotation.

Prefix
pato
Preferred Prefix
PATO
Version
2021-11-05
Links
Homepage OBO OWL OBO JSON
Contact
g.gkoutos@gmail.com
Pattern for Local Unique Identifiers

Local identifiers in Phenotype And Trait Ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier
0001998   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Phenotype And Trait Ontology should match this regular expression:
^PATO:\d{7}$

Example CURIE
PATO:0001998
MIRIAM Namespace Embedded in LUI
The legacy MIRIAM standard for generating CURIEs with this resource includes the namespaceEmbeddedInLUI as true. The actual part that gets prefixed before the local unique identifier regex, otherwise known as the banana, is PATO:. Therefore, you might see local unique identifiers written out as CURIEs.
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for pato.

Registry Name Metaprefix External Prefix
BioPortal Prefixes bioportal PATO
Gene Ontology Registry go PATO
Identifiers.org miriam pato
Name-to-Thing n2t pato
OBO Foundry obofoundry PATO
Ontology Lookup Service ols pato
OntoBee ontobee PATO
Prefix Commons prefixcommons PATO