Ensembl is a joint project between EMBL - EBI and the Sanger Institute to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms.

Prefix

ensembl

Alternative Prefixes

Ensembl

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in Ensembl Gene should match this regular expression:
^((ENS[FPTG]\d{11}(\.\d+)?)|(FB\w{2}\d{7})|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?)|([A-Z_a-z0-9]+(\.)?(t)?(\d+)?([a-z])?))$

Example Local Unique Identifiers

ENSG00000139618   Resolve
ENSG00000049246.14   Resolve
ENSG00000109819.9   Resolve
ENSG00000132326.12   Resolve
ENSG00000179094.16   Resolve
ENST00000264867.7   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Ensembl Gene should match this regular expression:
^ensembl:((ENS[FPTG]\d{11}(\.\d+)?)|(FB\w{2}\d{7})|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?)|([A-Z_a-z0-9]+(\.)?(t)?(\d+)?([a-z])?))$

Example CURIEs

ensembl:ENSG00000139618
ensembl:ENSG00000049246.14
ensembl:ENSG00000109819.9
ensembl:ENSG00000132326.12
ensembl:ENSG00000179094.16
ensembl:ENST00000264867.7

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for ensembl.

Providers are various services that resolve CURIEs to URLs. The example CURIE ensembl:ENSG00000139618 is used to demonstrate the provides available for ensembl. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Additional providers curated in the Bioregistry are listed here.