Ensembl is a joint project between EMBL - EBI and the Sanger Institute to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms.
ensembl
Local identifiers in Ensembl Gene should match this
regular expression:
^((ENS[FPTG]\d{11}(\.\d+)?)|(FB\w{2}\d{7})|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?)|([A-Z_a-z0-9]+(\.)?(t)?(\d+)?([a-z])?))$
Compact URIs (CURIEs) constructed from Ensembl Gene should match
this regular expression:
^ensembl:((ENS[FPTG]\d{11}(\.\d+)?)|(FB\w{2}\d{7})|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?)|([A-Z_a-z0-9]+(\.)?(t)?(\d+)?([a-z])?))$
bfo:0000051
)
The metaregistry provides mappings between the Bioregistry and other registries. There are 11 mappings to external registries for this resource with 6 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
ENSEMBL
|
|
EDAM
|
edam |
2610
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.fx0mw7
|
|
GO
![]() |
go |
ENSEMBL
|
|
Identifiers.org
![]() |
miriam |
ensembl
|
|
N2T
![]() |
n2t |
ensembl
|
|
NCBI
|
ncbi |
ENSEMBL
|
|
Prefix Commons
|
prefixcommons |
ensembl
|
|
re3data
![]() |
re3data |
r3d100010228
|
|
UniProt
|
uniprot |
DB-0023
|
|
Wikidata
|
wikidata |
P594
|
When using this resource in RDF, the following URI format should be used:
http://rdf.ebi.ac.uk/resource/ensembl/$1
Providers are various services that resolve CURIEs to URLs. The example CURIE
None:ENSG00000139618
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
CURATOR_REVIEW |
Ensembl US West mirror | http://uswest.ensembl.org/id/ENSG00000139618 |
CURATOR_REVIEW |
Ensembl US East mirror | http://useast.ensembl.org/id/ENSG00000139618 |
CURATOR_REVIEW |
Ensembl Asia mirror | http://asia.ensembl.org/id/ENSG00000139618 |
bgee |
Bgee | https://bgee.org/?page=gene&gene_id=ENSG00000139618 |
bio2rdf |
Bio2RDF | http://bio2rdf.org/ensembl:ENSG00000139618 |
gnomad |
Genome Aggregation database | https://gnomad.broadinstitute.org/gene/ENSG00000139618 |
opentargets.genetics |
OpenTargets Genetics | https://genetics.opentargets.org/gene/ENSG00000139618 |