Ensembl is a joint project between EMBL - EBI and the Sanger Institute to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms.

Prefix
ensembl
Alternative Prefixes
Ensembl
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Ensembl gene ID should match this regular expression:
^((ENS[FPTG]\\d{11}(\\.\\d+)?)|(FB\\w{2}\\d{7})|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?)|([A-Z_a-z0-9]+(\\.)?(t)?(\\d+)?([a-z])?))$

Example Local Unique Identifier
ENSG00000139618   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Ensembl gene ID should match this regular expression:
^ensembl:((ENS[FPTG]\\d{11}(\\.\\d+)?)|(FB\\w{2}\\d{7})|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?)|([A-Z_a-z0-9]+(\\.)?(t)?(\\d+)?([a-z])?))$

Example CURIE
ensembl:ENSG00000139618
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for ensembl.

Registry Name Metaprefix External Prefix
Gene Ontology Registry go ENSEMBL
Identifiers.org miriam ensembl
Name-to-Thing n2t ensembl
National Center for Biotechnology Information Registry ncbi ENSEMBL
Prefix Commons prefixcommons ENSEMBL
UniProt Cross-ref database uniprot Ensembl
Wikidata Property wikidata P594
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE ensembl:ENSG00000139618 is used to demonstrate the provides available for ensembl. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Ensembl gene ID ensembl https://www.ensembl.org/id/ENSG00000139618
Bioregistry bioregistry https://bioregistry.io/ensembl:ENSG00000139618
Identifiers.org miriam https://identifiers.org/ensembl:ENSG00000139618
Name-to-Thing n2t https://n2t.net/ensembl:ENSG00000139618
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bgee Bgee https://bgee.org/?page=gene&gene_id=ENSG00000139618
gnomad Genome Aggregation database https://gnomad.broadinstitute.org/gene/ENSG00000139618
CURATOR_REVIEW Ensembl US West mirror http://uswest.ensembl.org/id/ENSG00000139618
CURATOR_REVIEW Ensembl US East mirror http://useast.ensembl.org/id/ENSG00000139618
CURATOR_REVIEW Ensembl Asia mirror http://asia.ensembl.org/id/ENSG00000139618