Bioregistry - Chemical Information Ontology

Registry Chemical Information Ontology

Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them.

Prefix: cheminf
Preferred Prefix: CHEMINF
Version: 2.0
License: CC0 1.0
Links: Homepage Repository OWL
Contact: Egon Willighagen 0000-0001-7542-0286 egonw
Pattern for Local Unique Identifiers: Local identifiers in Chemical Information Ontology should match this regular expression:
^\d{6}$
Example Local Unique Identifier: 000410 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Chemical Information Ontology should match this regular expression:
^cheminf:\d{6}$
Example CURIE: cheminf:000410
Publications: 2011 The chemical information ontology: provenance and disambiguation for chemical data on the biological semantic web.

Ontology

Appears In (1): PROCO

Metaregistry Chemical Information Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for cheminf with 2 unique external prefixes.

Registry Name	Metaprefix	External Prefix
AberOWL	`aberowl`	`CHEMINF`
BioContext	`biocontext`	`CHEMINF`
BioPortal Prefixes	`bioportal`	`CHEMINF`
FAIRSharing	`fairsharing`	`FAIRsharing.sjhvyy`
OBO Foundry	`obofoundry`	`cheminf`
Ontology Lookup Service	`ols`	`cheminf`
OntoBee	`ontobee`	`CHEMINF`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE cheminf:000410 is used to demonstrate the provides available for cheminf. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
Chemical Information Ontology	`cheminf`	http://purl.obolibrary.org/obo/CHEMINF_000410
Bioregistry	`bioregistry`	https://bioregistry.io/cheminf:000410
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/CHEMINF_000410
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/cheminf/terms?iri=http://purl.obolibrary.org/obo/CHEMINF_000410
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/CHEMINF/?p=classes&conceptid=http://purl.obolibrary.org/obo/CHEMINF_000410
None	`semanticscience`	http://semanticscience.org/resource/CHEMINF_000410

Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code	Name	URL
`semanticscience`	Semantic Science	http://semanticscience.org/resource/CHEMINF_000410

Get the version:

>>> import bioregistry as br
>>> br.get_version("cheminf")
'2.0'

Get the license:

>>> import bioregistry as br
>>> br.get_license("cheminf")
'CC0 1.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("cheminf")
'https://github.com/semanticchemistry/semanticchemistry'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("cheminf")
'https://github.com/semanticchemistry/semanticchemistry'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("cheminf")
'https://github.com/semanticchemistry/semanticchemistry/raw/master/ontology/cheminf.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("cheminf")
'Egon Willighagen'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("cheminf")
'egon.willighagen@gmail.com'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("cheminf")
'egonw'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("cheminf")
'0000-0001-7542-0286'