Logo for Uber Anatomy Ontology Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data.

Prefix
uberon
Preferred Prefix
UBERON
Alternative Prefixes
Uber-anatomy ontology Uberon UBERON
Keywords
anatomy developmental biology life science obo ontology taxonomy
Version
2024-01-18
License
CC-BY-3.0
Links
Homepage Repository OBO OWL OBO JSON @uberanat
Contact
Chris Mungall   0000-0002-6601-2165   cmungall
Pattern for Local Unique Identifiers

Local identifiers in Uber Anatomy Ontology should match this regular expression:
^\d+$

Example Local Unique Identifier
2005080   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Uber Anatomy Ontology should match this regular expression:
^UBERON:\d+$

Example CURIE
UBERON:2005080
MIRIAM Namespace Embedded in LUI
The legacy MIRIAM standard for generating CURIEs with this resource annotates the namespaceEmbeddedInLUI as true. This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known as a banana) and therefore look like a CURIE. For Uber Anatomy Ontology, the banana looks like UBERON:. Therefore, you may see local unique identifiers for this resource that look like UBERON:2005080 (instead of the canonical form 2005080) and CURIEs for this resource that look like UBERON:UBERON:2005080 (instead of the canonical form UBERON:2005080). The Bioregistry will automatically strip off the banana when standardizing local unique identifiers and CURIEs.
Publications
Metaregistry Uber Anatomy Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 13 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL AberOWL logo aberowl UBERON
BioContext biocontext UBERON
BioPortal BioPortal Prefixes logo bioportal UBERON
Cellosaurus Cellosaurus Registry logo cellosaurus UBERON
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.4c0b6b
GO Gene Ontology Registry logo go UBERON
Identifiers.org Identifiers.org logo miriam uberon
N2T Name-to-Thing logo n2t uberon
OBO Foundry OBO Foundry logo obofoundry uberon
OLS Ontology Lookup Service logo ols uberon
OntoBee OntoBee logo ontobee UBERON
TogoID togoid Uberon
Wikidata Wikidata Property logo wikidata P1554
RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/UBERON_$1

Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
cellguide Cell Guide https://cellxgene.cziscience.com/cellguide/tissues/UBERON_2005080
cellxgene CELLxGENE https://onto.cellxgene-labs.prod.si.czi.technology/a/ontology/UBERON/UBERON:2005080