Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data.

Prefix
uberon
Preferred Prefix
UBERON
Alternative Prefixes
Uberon Uber-anatomy ontology UBERON
Version
2022-09-30
License
CC BY 3.0
Links
Homepage Repository OBO OWL OBO JSON @uberanat
Contact
Chris Mungall   0000-0002-6601-2165   cmungall
Pattern for Local Unique Identifiers

Local identifiers in Uber Anatomy Ontology should match this regular expression:
^\d+$

Example Local Unique Identifier
2005080   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Uber Anatomy Ontology should match this regular expression:
^uberon:\d+$

Example CURIE
uberon:2005080
MIRIAM Namespace Embedded in LUI
The legacy MIRIAM standard for generating CURIEs with this resource includes the namespaceEmbeddedInLUI as true. The actual part that gets prefixed before the local unique identifier regex, otherwise known as the banana, is UBERON:. Therefore, you might see local unique identifiers written out as CURIEs.
Publications
Metaregistry Uber Anatomy Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 12 mappings to external registries for uberon with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL aberowl UBERON
BioContext biocontext UBERON
BioPortal Prefixes bioportal UBERON
Cellosaurus Registry cellosaurus UBERON
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.4c0b6b
Gene Ontology Registry go UBERON
Identifiers.org Identifiers.org logo miriam uberon
Name-to-Thing Name-to-Thing logo n2t uberon
OBO Foundry OBO Foundry logo obofoundry uberon
Ontology Lookup Service Ontology Lookup Service logo ols uberon
OntoBee ontobee UBERON
Wikidata Property Wikidata Property logo wikidata P1554
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE uberon:2005080 is used to demonstrate the provides available for uberon. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Uber Anatomy Ontology uberon http://purl.obolibrary.org/obo/UBERON_2005080
Bioregistry bioregistry https://bioregistry.io/uberon:2005080
Identifiers.org miriam https://identifiers.org/UBERON:2005080
OBO Foundry obofoundry http://purl.obolibrary.org/obo/UBERON_2005080
Ontology Lookup Service ols https://www.ebi.ac.uk/ols/ontologies/uberon/terms?iri=http://purl.obolibrary.org/obo/UBERON_2005080
Name-to-Thing n2t https://n2t.net/uberon:2005080
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/UBERON/?p=classes&conceptid=http://purl.obolibrary.org/obo/UBERON_2005080