Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data.
uberon
UBERON
Local identifiers in Uber Anatomy Ontology should match this
regular expression:
^\d+$
Compact URIs (CURIEs) constructed from Uber Anatomy Ontology should match
this regular expression:
^uberon:\d+$
namespaceEmbeddedInLUI
as true.
This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known
as a banana)
and therefore look like a CURIE. For Uber Anatomy Ontology, the banana looks like
UBERON:
.
Therefore, you may see local unique identifiers for this resource that look like
UBERON:2005080
(instead of the canonical form 2005080
) and CURIEs for this resource that look like
uberon:UBERON:2005080
(instead of the canonical form uberon:2005080
).
The Bioregistry will automatically strip off the banana when standardizing local unique identifiers and CURIEs.
The metaregistry provides mappings between the Bioregistry and other registries. There are
12 mappings to external registries for uberon
with
3 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
AberOWL
![]() |
aberowl |
UBERON
|
|
BioContext | biocontext |
UBERON
|
|
BioPortal
![]() |
bioportal |
UBERON
|
|
Cellosaurus
![]() |
cellosaurus |
UBERON
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.4c0b6b
|
|
GO
![]() |
go |
UBERON
|
|
Identifiers.org
![]() |
miriam |
uberon
|
|
N2T
![]() |
n2t |
uberon
|
|
OBO Foundry
![]() |
obofoundry |
uberon
|
|
OLS
![]() |
ols |
uberon
|
|
OntoBee
![]() |
ontobee |
UBERON
|
|
Wikidata
|
wikidata |
P1554
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
uberon:2005080
is used to demonstrate the provides available for
uberon
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
cellxgene |
CELLxGENE | https://onto.cellxgene-labs.prod.si.czi.technology/a/ontology/UBERON/UBERON:2005080 |