Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis.
- Prefix
ncbigene- Preferred Prefix
NCBIGene- Alternative Prefixes
- NCBIGene entrez gene/locuslink entrez EntrezGene GeneID NCBI_GeneID EGID nihgeneid
- Keywords
- dna gene genetics genome genomics
- Links
- Homepage
- Contact
- Terence D. Murphy 0000-0001-9311-9745
- Identifier Space Owner
- National Center for Biotechnology Information
- Pattern for Local Unique Identifiers
-
Local identifiers in NCBI Gene should match this regular expression:
^\d+$ - Example Local Unique Identifier
- 100010 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from NCBI Gene should match this regular expression:
^NCBIGene:\d+$ - Example CURIE
- NCBIGene:100010
- Publications
- References
- GitHub Issue https://github.com/biopragmatics/bioregistry/issues/983
- Contributors
-
- contributor Rhiannon Cameron 0000-0002-9578-0788 cmrn-rhi
Ontology
A summary of the relations in the Bioregistry schema can be found here.
- Provided By
- ctd.gene genewiki wikigenes
- In Collection
- Synapse.org external links
Metaregistry NCBI Gene
The metaregistry provides mappings between the Bioregistry and other registries. There are 15 mappings to external registries for this resource with 9 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
NCBIGene
|
|
Biolink
|
biolink |
NCBIGene
|
|
EDAM
|
edam |
1027
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.5h3maw
|
|
GO
|
go |
NCBIGene
|
|
HL7
|
hl7 |
2.16.840.1.113883.6.340
|
|
Integbio
|
integbio |
nbdc00073
|
|
Identifiers.org
|
miriam |
ncbigene
|
|
N2T
|
n2t |
ncbigene
|
|
NCBI
|
ncbi |
GeneID
|
|
Prefix Commons
|
prefixcommons |
ncbigene
|
|
re3data
|
re3data |
r3d100010650
|
|
| TogoID | togoid |
Ncbigene
|
|
UniProt
|
uniprot |
DB-0118
|
|
Wikidata
|
wikidata |
P351
|
RDF Information
When using this resource in RDF, the following URI format should be used:
http://purl.uniprot.org/geneid/$1
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 100010 is used to demonstrate the providers
available for NCBI Gene. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| NCBI Gene | ncbigene |
https://www.ncbi.nlm.nih.gov/gene/100010 |
| NCBI Gene (RDF) | rdf |
http://purl.uniprot.org/geneid/100010 |
| Bioregistry | bioregistry |
https://bioregistry.io/ncbigene:100010 |
| Identifiers.org | miriam |
https://identifiers.org/ncbigene:100010 |
| Name-to-Thing | n2t |
https://n2t.net/ncbigene:100010 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Code | Name | URL |
|---|---|---|
CURATOR_REVIEW |
Bio2RDF | http://bio2rdf.org/ncbigene:100010 |
bio2rdf |
Bio2RDF | http://bio2rdf.org/ncbigene:100010 |
marrvel |
Model organism Aggregated Resources for Rare Variant ExpLoration | http://marrvel.org/model/gene/100010 |
scholia |
Scholia | https://scholia.toolforge.org/ncbi-gene/100010 |