Registry Entrez Gene
Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis.
- Prefix
ncbigene- Preferred Prefix
NCBIGene- Alternative Prefixes
- EntrezGene entrez gene/locuslink NCBIGene EGID NCBI_GeneID entrez
- Keywords
- dna gene genetics genome genomics
- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in Entrez Gene should match this regular expression:
^\d+$ - Example Local Unique Identifier
- 100010 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Entrez Gene should match this regular expression:
^ncbigene:\d+$ - Example CURIE
- ncbigene:100010
- Publications
Metaregistry Entrez Gene
The metaregistry provides mappings between the Bioregistry and other registries. There are
13 mappings to external registries for ncbigene with
8 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
NCBIGene
|
|
| Biolink Model Registry | biolink |
NCBIGene
|
|
| EDAM Ontology | edam |
1027
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.5h3maw
|
|
| Gene Ontology Registry | go |
NCBIGene
|
|
| HL7 External Code Systems | hl7 |
2.16.840.1.113883.6.340
|
|
Identifiers.org
|
miriam |
ncbigene
|
|
Name-to-Thing
|
n2t |
ncbigene
|
|
| National Center for Biotechnology Information Registry | ncbi |
GeneID
|
|
| Prefix Commons | prefixcommons |
ncbigene
|
|
| Registry of Research Data Repositories | re3data |
r3d100010650
|
|
| UniProt Cross-ref database | uniprot |
DB-0118
|
|
Wikidata Property
|
wikidata |
P351
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
ncbigene:100010
is used to demonstrate the provides available for
ncbigene. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| Entrez Gene | ncbigene |
https://www.ncbi.nlm.nih.gov/gene/100010 |
| Bioregistry | bioregistry |
https://bioregistry.io/ncbigene:100010 |
| Identifiers.org | miriam |
https://identifiers.org/ncbigene:100010 |
| Name-to-Thing | n2t |
https://n2t.net/ncbigene:100010 |
| None | scholia |
https://scholia.toolforge.org/ncbi-gene/100010 |
| None | CURATOR_REVIEW |
http://ncbigene.bio2rdf.org/describe/?url=http://bio2rdf.org/ncbigene:100010 |
| None | marrvel |
http://marrvel.org/model/gene/100010 |
| None | scholia |
https://scholia.toolforge.org/ncbi-gene/100010 |
Extra Providers
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
CURATOR_REVIEW |
Bio2RDF | http://ncbigene.bio2rdf.org/describe/?url=http://bio2rdf.org/ncbigene:100010 |
marrvel |
Model organism Aggregated Resources for Rare Variant ExpLoration | http://marrvel.org/model/gene/100010 |
scholia |
Scholia | https://scholia.toolforge.org/ncbi-gene/100010 |