Registry The Amphioxus Development and Anatomy Ontology

An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum).

Prefix: amphx
Preferred Prefix: AMPHX
Keywords: obo ontology
Version: 2020-12-18
License: CC-BY-3.0
Links: Homepage Repository OBO OWL
Contact: Hector Escriva 0000-0001-7577-5028 hescriva
Pattern for Local Unique Identifiers: Local identifiers in The Amphioxus Development and Anatomy Ontology should match this regular expression:
^\d+$
Example Local Unique Identifier: 1000160 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from The Amphioxus Development and Anatomy Ontology should match this regular expression:
^amphx:\d+$
Example CURIE: amphx:1000160

Ontology

Depends On (1) (bioregistry.schema:0000017 ): UBERON

Metaregistry The Amphioxus Development and Anatomy Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for amphx with 1 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`AMPHX`
BioPortal	`bioportal`	`AMPHX`
OBO Foundry	`obofoundry`	`amphx`
OLS	`ols`	`amphx`
OntoBee	`ontobee`	`AMPHX`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE amphx:1000160 is used to demonstrate the provides available for amphx. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
Bioregistry	`bioregistry`	https://bioregistry.io/amphx:1000160
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/AMPHX_1000160
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/amphx/terms?iri=http://purl.obolibrary.org/obo/AMPHX_1000160
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/AMPHX/?p=classes&conceptid=http://purl.obolibrary.org/obo/AMPHX_1000160

Get the version:

>>> import bioregistry as br
>>> br.get_version("amphx")
'2020-12-18'

Get the license:

>>> import bioregistry as br
>>> br.get_license("amphx")
'CC-BY-3.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("amphx")
'https://github.com/EBISPOT/amphx_ontology'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("amphx")
'https://github.com/EBISPOT/amphx_ontology'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("amphx")
'http://purl.obolibrary.org/obo/amphx.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("amphx")
'http://purl.obolibrary.org/obo/amphx.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("amphx")
'Hector Escriva'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("amphx")
'hescriva@obs-banyuls.fr'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("amphx")
'hescriva'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("amphx")
'0000-0001-7577-5028'