Registry Genomic Epidemiology Ontology

The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks.

Prefix
genepio
Preferred Prefix
GENEPIO
Version
2022-02-06
Links
Homepage Repository OWL
Contact
Damion Dooley   0000-0002-8844-9165   ddooley
Pattern for Local Unique Identifiers

Local identifiers in Genomic Epidemiology Ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier
0001885   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Genomic Epidemiology Ontology should match this regular expression:
^GENEPIO:\d{7}$

Example CURIE
GENEPIO:0001885
Metaregistry Genomic Epidemiology Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for genepio.

Registry Name Metaprefix External Prefix
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.y1mmbv
OBO Foundry OBO Foundry logo obofoundry GENEPIO
Ontology Lookup Service Ontology Lookup Service logo ols genepio
OntoBee ontobee GENEPIO
Prefix Commons prefixcommons GENEPIO
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE genepio:0001885 is used to demonstrate the provides available for genepio. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Genomic Epidemiology Ontology genepio http://purl.obolibrary.org/obo/GENEPIO_0001885
Bioregistry bioregistry https://bioregistry.io/genepio:0001885
OBO Foundry obofoundry http://purl.obolibrary.org/obo/GENEPIO_0001885
Ontology Lookup Service ols https://www.ebi.ac.uk/ols/ontologies/genepio/terms?iri=http://purl.obolibrary.org/obo/GENEPIO_0001885