Registry An ontology of core ecological entities

Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms.

Prefix: ecocore
Preferred Prefix: ECOCORE
Keywords: obo ontology
Version: 2022-03-09
License: CC-BY-3.0
Links: Homepage Repository OBO OWL
Contact: Pier Luigi Buttigieg 0000-0002-4366-3088 pbuttigieg
Pattern for Local Unique Identifiers: Local identifiers in An ontology of core ecological entities should match this regular expression:
^\d+$
Example Local Unique Identifier: 00000001 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from An ontology of core ecological entities should match this regular expression:
^ecocore:\d+$
Example CURIE: ecocore:00000001

Ontology

Depends On (10) (bioregistry.schema:0000017 ): BFO CHEBI ENVO GO IAO PATO PCO PO RO UBERON

Metaregistry An ontology of core ecological entities

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for ecocore with 1 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`ECOCORE`
BioContext	`biocontext`	`ECOCORE`
BioPortal	`bioportal`	`ECOCORE`
OBO Foundry	`obofoundry`	`ecocore`
OLS	`ols`	`ecocore`
OntoBee	`ontobee`	`ECOCORE`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE ecocore:00000001 is used to demonstrate the provides available for ecocore. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
An ontology of core ecological entities	`ecocore`	http://purl.obolibrary.org/obo/ECOCORE_00000001
Bioregistry	`bioregistry`	https://bioregistry.io/ecocore:00000001
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/ECOCORE_00000001
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/ecocore/terms?iri=http://purl.obolibrary.org/obo/ECOCORE_00000001
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/ECOCORE/?p=classes&conceptid=http://purl.obolibrary.org/obo/ECOCORE_00000001

Get the version:

>>> import bioregistry as br
>>> br.get_version("ecocore")
'2022-03-09'

Get the license:

>>> import bioregistry as br
>>> br.get_license("ecocore")
'CC-BY-3.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("ecocore")
'https://github.com/EcologicalSemantics/ecocore'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("ecocore")
'https://github.com/EcologicalSemantics/ecocore'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("ecocore")
'http://purl.obolibrary.org/obo/ecocore.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("ecocore")
'http://purl.obolibrary.org/obo/ecocore.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("ecocore")
'Pier Luigi Buttigieg'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("ecocore")
'p.buttigieg@gmail.com'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("ecocore")
'pbuttigieg'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("ecocore")
'0000-0002-4366-3088'