Registry Chemical Entities of Biological Interest

Logo for Chemical Entities of Biological Interest Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds.

Prefix
chebi
Preferred Prefix
CHEBI
Alternative Prefixes
CHEBIID CHEBI ChEBI
Keywords
biochemistry chemical chemistry molecular entity molecular structure natural product obo ontology small molecule taxonomic classification
Version
236
License
CC-BY-4.0
Links
Homepage Repository OBO OWL
Contact
Adnan Malik   0000-0001-8123-5351   amalik01
Pattern for Local Unique Identifiers

Local identifiers in Chemical Entities of Biological Interest should match this regular expression:
^\d+$

Example Local Unique Identifier
138488   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Chemical Entities of Biological Interest should match this regular expression:
^CHEBI:\d+$

Example CURIE
CHEBI:138488
MIRIAM Namespace Embedded in LUI
The legacy MIRIAM standard for generating CURIEs with this resource annotates the namespaceEmbeddedInLUI as true. This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known as a banana) and therefore look like a CURIE. For Chemical Entities of Biological Interest, the banana looks like CHEBI:. Therefore, you may see local unique identifiers for this resource that look like CHEBI:138488 (instead of the canonical form 138488) and CURIEs for this resource that look like CHEBI:CHEBI:138488 (instead of the canonical form CHEBI:138488). The Bioregistry will automatically strip off the banana when standardizing local unique identifiers and CURIEs.
Publications
Metaregistry Chemical Entities of Biological Interest

The metaregistry provides mappings between the Bioregistry and other registries. There are 19 mappings to external registries for this resource with 8 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL AberOWL logo aberowl CHEBI
BARTOC Basic Register of Thesauri, Ontologies & Classifications logo bartoc 558
BioContext biocontext CHEBI
BioPortal BioPortal Prefixes logo bioportal CHEBI
Cellosaurus Cellosaurus Registry logo cellosaurus ChEBI
CHEMINF cheminf 000407
EDAM EDAM Ontology logo edam 1174
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.62qk8w
GO Gene Ontology Registry logo go CHEBI
Integbio Integbio logo integbio nbdc00027
Identifiers.org Identifiers.org logo miriam chebi
N2T Name-to-Thing logo n2t chebi
OBO Foundry OBO Foundry logo obofoundry chebi
OLS Ontology Lookup Service logo ols chebi
OntoBee OntoBee logo ontobee CHEBI
Prefix Commons Prefix Commons logo prefixcommons chebi
re3data Registry of Research Data Repositories logo re3data r3d100012626
TogoID togoid Chebi
Wikidata Wikidata Property logo wikidata P683
RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/CHEBI_$1

Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 138488 is used to demonstrate the providers available for Chemical Entities of Biological Interest. A guide for curating additional providers can be found here.

Name Metaprefix URI
Chemical Entities of Biological Interest chebi http://purl.obolibrary.org/obo/CHEBI_138488
Chemical Entities of Biological Interest (RDF) rdf http://purl.obolibrary.org/obo/CHEBI_138488
Bioregistry bioregistry https://bioregistry.io/chebi:138488
Identifiers.org miriam https://identifiers.org/CHEBI:138488
OBO Foundry obofoundry http://purl.obolibrary.org/obo/CHEBI_138488
Ontology Lookup Service ols https://www.ebi.ac.uk/ols4/ontologies/chebi/terms?iri=http://purl.obolibrary.org/obo/CHEBI_138488
Name-to-Thing n2t https://n2t.net/chebi:138488
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/CHEBI/?p=classes&conceptid=http://purl.obolibrary.org/obo/CHEBI_138488
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/chebi:138488
chebi-img ChEBI https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=138488