logo for NFDI4Chem Collection

A collection of ontologies relevant within the NFDI4Chem project that is mostly based on the overview paper Ontologies4Chem: the landscape of ontologies in chemistry.

NFDI4Chem deploys a custom instance of the Ontology Lookup Service (OLS), called NFDI4Chem Terminology Services (TS), that provides the ontologies in this list. This list contains ontologies that cover various domains of chemistry (e.g. ChEBI, CHMO, and RXNO), those that are dependencies of these chemistry specific ontologies (e.g. BFO, RO, IAO, and OBI) as well as those ontologies, which where indexed in the NFDI4Chem TS for interoperability research purposes (e.g. PROV-O, SOSA, and OBOE).

Identifier
0000014
Keywords
chemistry
Maintainers
Philip Strömert ORCiD logo
Contributors
Philip Strömert ORCiD logo
Charles Tapley Hoyt ORCiD logo
Organizations
NFDI4ChemROR logoWikidata logo
NFDIROR logoWikidata logo
Size
51
References
https://terminology.nfdi4chem.de/ts/
https://doi.org/10.1515/pac-2021-2007
Related Collections
tib.collection:nfdi4chem
Downloads
AberOWL AgroPortal BARTOC BioContext BiodivPortal Biolink BioPortal Bioregistry Cellosaurus CHEMINF CropOCT EcoPortal EDAM FAIRSharing GO HL7 Integbio LOV Identifiers.org N2T NCBI OBO Foundry OLS OntoBee Pathguide Prefix.cc Prefix Commons re3data RRID TIB-TS TogoID UniProt Wikidata Wikidata (E) Zazuko OLS Configurations
Prefix Name License Download
afo Allotrope Merged Ontology Suite Custom
bfo Basic Formal Ontology CC-BY-4.0
bto BRENDA Tissue Ontology CC-BY-4.0
chebi Chemical Entities of Biological Interest
Used in YMDB, HMDB, PubChem, MassBank, KNApSAcK, UM-BBD, GMD, SMID-DB
CC-BY-4.0
cheminf Chemical Information Ontology CC0-1.0
chemrof Chemical Entity Materials and Reactions Ontological Framework CC0-1.0
chiro ChEBI Integrated Role Ontology CC0-1.0
chmo Chemical Methods Ontology CC-BY-4.0
duo Data Use Ontology CC-BY-4.0
edam EDAM Ontology CC BY-SA 4.0
efo Experimental Factor Ontology Apache-2.0
enm eNanoMapper ontology CC-BY-3.0
envo Environment Ontology CC0-1.0
fair FAIR Vocabulary
fix Physico-chemical methods and properties
gainesville.core Gainesville Core Ontology CC-BY-3.0
iao Information Artifact Ontology CC-BY-4.0
mod Protein modification CC-BY-4.0
mop Molecular Process Ontology CC-BY-4.0
ms Mass spectrometry ontology CC-BY-3.0
ncit NCI Thesaurus CC-BY-4.0
nmr NMR-instrument specific component of metabolomics investigations
obi Ontology for Biomedical Investigations CC-BY-4.0
oboe The Extensible Observation Ontology CC-BY-3.0
om Ontology of units of Measure CC-BY-4.0
ontorxn OntoRXN CC-BY-4.0
pato Phenotype And Trait Ontology CC-BY-3.0
proco Process Chemistry Ontology CC-BY-4.0
prov PROV Namespace
reproduceme REPRODUCE-ME Ontology
rex Physico-chemical process
ro Relation Ontology CC0-1.0
rxno Name Reaction Ontology CC-BY-4.0
sepio Scientific Evidence and Provenance Information Ontology CC-BY-3.0
sio Semanticscience Integrated Ontology CC-BY-4.0
sosa Sensor, Observation, Sample, and Actuator Ontology Custom
ssn Semantic Sensor Network Ontology Custom
ssn.system System capabilities, operating ranges, and survival ranges ontology Custom
suprabank.additive SupraBank Additive
suprabank.buffer SupraBank Buffer
suprabank.interaction SupraBank Interaction
suprabank.molecule SupraBank Molecule
suprabank.solvent SupraBank Solvent
swo Software ontology CC-BY-4.0
time Time Ontology in OWL CC-BY-4.0
uo Units of measurement ontology CC-BY-3.0
vibso Vibrational Spectroscopy Ontology First Party CC-BY-4.0
voc4cat A vocabulary for the catalysis disciplines CC0-1.0
worldavatar.compchem Computational Chemistry Ontology
worldavatar.kin Ontology for Chemical Kinetic Reaction Mechanisms
worldavatar.os OntoSpecies - Chemical Species Ontology for Data Integration and Knowledge Discovery