The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance.

Preferred Prefix
obo ontology
Homepage Repository OBO OWL
Gerhard Mayer   0000-0002-1767-2343   germa
Pattern for Local Unique Identifiers

Local identifiers in Mass spectrometry ontology should match this regular expression:

Example Local Unique Identifier
1000560   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Mass spectrometry ontology should match this regular expression:

Example CURIE
MIRIAM Namespace Embedded in LUI
The legacy MIRIAM standard for generating CURIEs with this resource includes the namespaceEmbeddedInLUI as true. The actual part that gets prefixed before the local unique identifier regex, otherwise known as the banana, is MS:. Therefore, you might see local unique identifiers written out as CURIEs.
2013 The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary.
Depends On (2)
Metaregistry Mass spectrometry ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for ms with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL aberowl MS
BioContext biocontext MS
BioPortal Prefixes bioportal MS logo miriam ms
Name-to-Thing Name-to-Thing logo n2t ms
OBO Foundry OBO Foundry logo obofoundry ms
Ontology Lookup Service Ontology Lookup Service logo ols ms
OntoBee ontobee MS