The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance.

Prefix

ms

Preferred Prefix

MS

Links

Homepage Repository OBO OWL

Contact

Gerhard Mayer   0000-0002-1767-2343   germa

Pattern for Local Unique Identifiers

Local identifiers in Mass spectrometry ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier

1000560   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Mass spectrometry ontology should match this regular expression:
^MS:\d{7}$

Example CURIE

MS:1000560

MIRIAM Namespace Embedded in LUI

The legacy MIRIAM standard for generating CURIEs with this resource includes the namespaceEmbeddedInLUI as true. The actual part that gets prefixed before the local unique identifier regex, otherwise known as the banana, is MS:. Therefore, you might see local unique identifiers written out as CURIEs.

References

• Publication The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary.

Depends On

PATO UO

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for ms.

Providers are various services that resolve CURIEs to URLs. The example CURIE ms:1000560 is used to demonstrate the provides available for ms. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.