The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance.
ms
MS
Local identifiers in Mass spectrometry ontology should match this
regular expression:
^\d{7}$
Compact URIs (CURIEs) constructed from Mass spectrometry ontology should match
this regular expression:
^ms:\d{7}$
namespaceEmbeddedInLUI
as true. The actual
part that gets prefixed before the local unique identifier regex,
otherwise known as the banana, is
MS:
.
Therefore, you might see local unique identifiers written out as CURIEs.
The metaregistry provides mappings between the Bioregistry and other registries. There are
8 mappings to external registries for ms
with
1 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
AberOWL | aberowl |
MS
|
|
BioContext | biocontext |
MS
|
|
BioPortal Prefixes | bioportal |
MS
|
|
Identifiers.org
![]() |
miriam |
ms
|
|
Name-to-Thing
![]() |
n2t |
ms
|
|
OBO Foundry
![]() |
obofoundry |
ms
|
|
Ontology Lookup Service
![]() |
ols |
ms
|
|
OntoBee | ontobee |
MS
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
ms:1000560
is used to demonstrate the provides available for
ms
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.