Registry Pathogen Host Interaction Phenotype Ontology

Ontology of species-neutral phenotypes observed in pathogen-host interactions.

Prefix: phipo
Preferred Prefix: PHIPO
Keywords: obo ontology
Version: 2021-07-14
License: CC-BY-3.0
Links: Homepage Repository OBO OWL
Contact: Alayne Cuzick 0000-0001-8941-3984 CuzickA
Pattern for Local Unique Identifiers: Local identifiers in Pathogen Host Interaction Phenotype Ontology should match this regular expression:
^\d{7}$
Example Local Unique Identifier: 0000001 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Pathogen Host Interaction Phenotype Ontology should match this regular expression:
^phipo:\d{7}$
Example CURIE: phipo:0000001
Publications: 2022 PHI-base in 2022: a multi-species phenotype database for Pathogen-Host Interactions.

Ontology

Depends On (1) (bioregistry.schema:0000017 ): PATO

Metaregistry Pathogen Host Interaction Phenotype Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for phipo with 1 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`PHIPO`
BioPortal	`bioportal`	`PHIPO`
OBO Foundry	`obofoundry`	`phipo`
OLS	`ols`	`phipo`
OntoBee	`ontobee`	`PHIPO`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE phipo:0000001 is used to demonstrate the provides available for phipo. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
Bioregistry	`bioregistry`	https://bioregistry.io/phipo:0000001
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/PHIPO_0000001
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/phipo/terms?iri=http://purl.obolibrary.org/obo/PHIPO_0000001
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/PHIPO/?p=classes&conceptid=http://purl.obolibrary.org/obo/PHIPO_0000001

Get the version:

>>> import bioregistry as br
>>> br.get_version("phipo")
'2021-07-14'

Get the license:

>>> import bioregistry as br
>>> br.get_license("phipo")
'CC-BY-3.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("phipo")
'https://github.com/PHI-base/phipo'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("phipo")
'https://github.com/PHI-base/phipo'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("phipo")
'http://purl.obolibrary.org/obo/phipo.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("phipo")
'http://purl.obolibrary.org/obo/phipo.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("phipo")
'Alayne Cuzick'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("phipo")
'alayne.cuzick@rothamsted.ac.uk'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("phipo")
'CuzickA'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("phipo")
'0000-0001-8941-3984'