The REPRODUCE-ME ontology is an extension of the PROV-O and the P-Plan ontology to describe a complete path of a scientific experiment. It expresses the REPRODUCE-ME Data Model using the OWL2 Web Ontology Language (OWL2). It provides a set of classes and properties to represent a scientific experiment including its computational and non-computational steps to track the provenance of results. It describes a complete path of a scientific experiment considering the use-case of biological imaging and microscopy experiments, computational experiments, including Jupyter notebooks and scripts. It describes an experiment and its data, agents, activities, plans, steps, variables, instruments, materials, and settings required for its reproducibility.

Prefix
reproduceme
Version
1.1
Links
Homepage OWL
Contact
Sheeba Samuel
Pattern for Local Unique Identifiers
Missing LUI pattern
Example Local Unique Identifier
MicrobeamManipulation   Resolve
Pattern for CURIES
Could not construct CURIE pattern
Example CURIE
reproduceme:MicrobeamManipulation
Metaregistry REPRODUCE-ME Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for reproduceme with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL aberowl REPRODUCE-ME
BioPortal Prefixes bioportal REPRODUCE-ME
Ontology Lookup Service Ontology Lookup Service logo ols reproduceme
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE reproduceme:MicrobeamManipulation is used to demonstrate the provides available for reproduceme. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
REPRODUCE-ME Ontology reproduceme https://w3id.org/reproduceme#MicrobeamManipulation
Bioregistry bioregistry https://bioregistry.io/reproduceme:MicrobeamManipulation