The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities.

Prefix

sio

Keywords

natural science ontology subject agnostic

Version

1.59

Links

Homepage Repository OWL

Contact

Michel Dumontier   0000-0003-4727-9435   micheldumontier

Pattern for Local Unique Identifiers

Local identifiers in Semanticscience Integrated Ontology should match this regular expression:
^\d{6}$

Example Local Unique Identifier

000912   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Semanticscience Integrated Ontology should match this regular expression:
^sio:\d{6}$

Example CURIE

sio:000912

Namespace Embedded in LUI

This resource has been annotated by the Bioregistry as having a potential namespace embedded in LUI. This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known as a banana) and therefore look like a CURIE. For Semanticscience Integrated Ontology, the banana looks like SIO_. Therefore, you may see local unique identifiers for this resource that look like SIO_000912 (instead of the canonical form 000912) and CURIEs for this resource that look like sio:SIO_000912 (instead of the canonical form sio:000912). The Bioregistry will automatically strip off the banana when standardizing local unique identifiers and CURIEs.

Publications

2014 The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for this resource with 2 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE sio:000912 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.