Bioregistry
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Collections Resources mentioned in "Sharing biological data: why, when, and how"
JSON YAML RDF (turtle) RDF (JSON-LD) RDF (n3) Context JSON-LD

These resources were listed in Sharing biological data: why, when, and how, which prompted further novel curation of the Bioregistry which included the addition of GenBank, Panorama Public, EMPIAR, and SSBD. It also prompted the curation of mappings to FAIRSharing when possible.

Identifier
0000001
Contributors
Charles Tapley Hoyt
Resources
  • BioStudies database (biostudies)
  • Biological Magnetic Resonance Data Bank (bmrb)
  • Cell Image Library (cellimage)
  • European Genome-phenome Archive Dataset (ega.dataset)
  • European Genome-phenome Archive Study (ega.study)
  • Electron Microscopy Data Bank (emdb)
  • Electron Microscopy Public Image Archive (empiar)
  • GenBank (genbank)
  • NCBI Gene Expression Omnibus (geo)
  • Image Data Resource (idr)
  • Sequence Read Archive (insdc.sra)
  • MassIVE (massive)
  • Panorama Public (panorama)
  • PDB Structure (pdb)
  • PeptideAtlas Dataset (peptideatlas.dataset)
  • PRIDE Controlled Vocabulary (pride)
  • System Science of Biological Dynamics dataset (ssbd.dataset)
  • System Science of Biological Dynamics project (ssbd.project)

Developed with ❤️ by the INDRA Lab in the Harvard Program in Therapeutic Science (HiTS).
Funded by the DARPA Young Faculty Award W911NF2010255 (PI: Benjamin M. Gyori).
Point of contact: @cthoyt. (Source code)