GenBank ® is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences (Nucleic Acids Research, 2013 Jan;41(D1):D36-42).

bioinformatics data management dna epidemiology functional genomics genomics metagenomics transcriptomics virology
Missing Contact
Pattern for Local Unique Identifiers
Missing LUI pattern
Example Local Unique Identifier
U49845   Resolve
Example CURIE

A summary of the relations in the Bioregistry schema can be found here.

Has incoming URI collisions

The following resources share a URI format string with genbank:

When generating an extended prefix map, their respective CURIE prefixes and URI prefixes are merged into the record for genbank. If you believe that these are distinct semantic spaces and should not be merged, please open a new issue on the Bioregistry issue tracker for discussion.

In Collection
Resources mentioned in "Sharing biological data: why, when, and how"
Metaregistry GenBank

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for this resource with 7 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext GenBank
CHEMINF cheminf 000304
EDAM EDAM Ontology logo edam 2292
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.9kahy4
GO Gene Ontology Registry logo go GenBank
Integbio Integbio logo integbio nbdc00276
Prefix Commons Prefix Commons logo prefixcommons genbank
re3data Registry of Research Data Repositories logo re3data r3d100010528
UniProt UniProt Cross-ref database logo uniprot DB-0028

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier U49845 is used to demonstrate the providers available for GenBank. A guide for curating additional providers can be found here.

Name Metaprefix URI
GenBank genbank
Bioregistry bioregistry
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF