MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data.

functional genomics metabolomics metaproteomics omics phenomics proteomics
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Mingxun Wang   0000-0001-7647-6097
Pattern for Local Unique Identifiers

Local identifiers in MassIVE should match this regular expression:

Example Local Unique Identifier
MSV000082131   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from MassIVE should match this regular expression:

Example CURIE

A summary of the relations in the Bioregistry schema can be found here.

In Collection
Resources mentioned in "Sharing biological data: why, when, and how"
Metaregistry MassIVE

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext MASSIVE
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.LYsiMd logo miriam massive
N2T Name-to-Thing logo n2t massive
UniProt UniProt Cross-ref database logo uniprot DB-0241

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier MSV000082131 is used to demonstrate the providers available for MassIVE. A guide for curating additional providers can be found here.

Name Metaprefix URI
MassIVE massive
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
omicsdi MassIVE through OmicsDI