The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database.

Prefix

insdc.sra

Keywords

biology epidemiology genomics virology

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in Sequence Read Archive should match this regular expression:
^[SED]R[APRSXZ]\d+$

Example Local Unique Identifier

SRX000007   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Sequence Read Archive should match this regular expression:
^insdc\.sra:[SED]R[APRSXZ]\d+$

Example CURIE

insdc.sra:SRX000007

Publications

• 2015 Investigation into the annotation of protocol sequencing steps in the sequence read archive.
• 2011 The Sequence Read Archive: explosive growth of sequencing data.
• 2007 Database resources of the National Center for Biotechnology Information.

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for insdc.sra with 3 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE insdc.sra:SRX000007 is used to demonstrate the provides available for insdc.sra. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Additional providers curated in the Bioregistry are listed here.