The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database.

biology epidemiology genomics virology
Hugh P Shanahan   0000-0003-1374-6015   hughshanahan
Pattern for Local Unique Identifiers

Local identifiers in Sequence Read Archive should match this regular expression:

Example Local Unique Identifier
SRX000007   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Sequence Read Archive should match this regular expression:

Example CURIE

A summary of the relations in the Bioregistry schema can be found here.

In Collection
Resources mentioned in "Sharing biological data: why, when, and how"
Metaregistry Sequence Read Archive

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext INSDC.SRA
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.g7t2hv logo miriam insdc.sra
N2T Name-to-Thing logo n2t insdc.sra
re3data Registry of Research Data Repositories logo re3data r3d100010775

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier SRX000007 is used to demonstrate the providers available for Sequence Read Archive. A guide for curating additional providers can be found here.

Name Metaprefix URI
Sequence Read Archive insdc.sra
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
ddbj DDBJ Sequence Read Archive (DRA)
ebi European Nucleotide Archive (ENA)