Registry Provisional Cell Ontology

Cell types that are provisionally defined by experimental techniques such as single cell transcriptomics rather than a straightforward & coherent set of properties.

Prefix: pcl
Preferred Prefix: PCL
Keywords: anatomy annotation cell cell biology life science obo ontology
Version: 2024-07-11
License: CC-BY-4.0
Links: Homepage Repository OBO OWL OBO JSON
Contact: David Osumi-Sutherland 0000-0002-7073-9172 dosumis
Pattern for Local Unique Identifiers: Local identifiers in Provisional Cell Ontology should match this regular expression:
^\d{7}$
Example Local Unique Identifier: 0011124 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Provisional Cell Ontology should match this regular expression:
^PCL:\d{7}$
Example CURIE: PCL:0011124
Publications: 2021 Brain Data Standards - A method for building data-driven cell-type ontologies

Ontology

A summary of the relations in the Bioregistry schema can be found here.

Depends On (12) (bioregistry.schema:0000017 ): BFO CHEBI CL GO NBO NCBITaxon OMO PATO PR RO SO UBERON

Metaregistry Provisional Cell Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`PCL`
BioPortal	`bioportal`	`PCL`
FAIRSharing	`fairsharing`	`FAIRsharing.bfcfd0`
OBO Foundry	`obofoundry`	`pcl`
OLS	`ols`	`pcl`
OntoBee	`ontobee`	`PCL`

RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/PCL_$1

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0011124 is used to demonstrate the providers available for Provisional Cell Ontology. A guide for curating additional providers can be found here.

Name	Metaprefix	URI
Provisional Cell Ontology	`pcl`	http://purl.obolibrary.org/obo/PCL_0011124
Provisional Cell Ontology (RDF)	`rdf`	http://purl.obolibrary.org/obo/PCL_0011124
Bioregistry	`bioregistry`	https://bioregistry.io/pcl:0011124
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/PCL_0011124
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols4/ontologies/pcl/terms?iri=http://purl.obolibrary.org/obo/PCL_0011124
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/PCL/?p=classes&conceptid=http://purl.obolibrary.org/obo/PCL_0011124

Get the version:

>>> import bioregistry as br
>>> br.get_version("pcl")
'2024-07-11'

Get the license:

>>> import bioregistry as br
>>> br.get_license("pcl")
'CC-BY-4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("pcl")
'https://github.com/obophenotype/provisional_cell_ontology'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("pcl")
'https://github.com/obophenotype/provisional_cell_ontology'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("pcl")
'http://purl.obolibrary.org/obo/pcl.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("pcl")
'http://purl.obolibrary.org/obo/pcl.owl'

Get the JSON download link:

>>> import bioregistry as br
>>> br.get_json_download("pcl")
'http://purl.obolibrary.org/obo/pcl.json'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("pcl")
'David Osumi-Sutherland'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("pcl")
'davidos@ebi.ac.uk'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("pcl")
'dosumis'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("pcl")
'0000-0002-7073-9172'