Cell types that are provisionally defined by experimental techniques such as single cell transcriptomics rather than a straightforward & coherent set of properties.

Prefix
pcl
Preferred Prefix
PCL
Keywords
anatomy annotation cell cell biology life science obo ontology
Version
2024-07-11
License
CC-BY-4.0
Links
Homepage Repository OBO OWL OBO JSON
Contact
David Osumi-Sutherland   0000-0002-7073-9172   dosumis
Pattern for Local Unique Identifiers

Local identifiers in Provisional Cell Ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier
0011124   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Provisional Cell Ontology should match this regular expression:
^PCL:\d{7}$

Example CURIE
PCL:0011124
Publications
2021 Brain Data Standards - A method for building data-driven cell-type ontologies
Ontology

A summary of the relations in the Bioregistry schema can be found here.

Depends On (12) (bioregistry.schema:0000017 )
BFO CHEBI CL GO NBO NCBITaxon OMO PATO PR RO SO UBERON
Metaregistry Provisional Cell Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL AberOWL logo aberowl PCL
BioPortal BioPortal Prefixes logo bioportal PCL
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.bfcfd0
OBO Foundry OBO Foundry logo obofoundry pcl
OLS Ontology Lookup Service logo ols pcl
OntoBee OntoBee logo ontobee PCL
RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/PCL_$1

Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0011124 is used to demonstrate the providers available for Provisional Cell Ontology. A guide for curating additional providers can be found here.

Name Metaprefix URI
Provisional Cell Ontology pcl http://purl.obolibrary.org/obo/PCL_0011124
Provisional Cell Ontology (RDF) rdf http://purl.obolibrary.org/obo/PCL_0011124
Bioregistry bioregistry https://bioregistry.io/pcl:0011124
OBO Foundry obofoundry http://purl.obolibrary.org/obo/PCL_0011124
Ontology Lookup Service ols https://www.ebi.ac.uk/ols4/ontologies/pcl/terms?iri=http://purl.obolibrary.org/obo/PCL_0011124
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/PCL/?p=classes&conceptid=http://purl.obolibrary.org/obo/PCL_0011124