Registry Sequence types and features ontology

The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data.

Prefix
so
Preferred Prefix
SO
Version
2021-11-22
License
CC BY 4.0
Links
Homepage Repository OBO OWL
Contact
Karen Eilbeck   0000-0002-0831-6427   keilbeck
Pattern for Local Unique Identifiers

Local identifiers in Sequence types and features ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier
0001157   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Sequence types and features ontology should match this regular expression:
^so:\d{7}$

Example CURIE
so:0001157
MIRIAM Namespace Embedded in LUI
The legacy MIRIAM standard for generating CURIEs with this resource includes the namespaceEmbeddedInLUI as true. The actual part that gets prefixed before the local unique identifier regex, otherwise known as the banana, is SO:. Therefore, you might see local unique identifiers written out as CURIEs.
Publications
Ontology
Appears In (1)
PCL
Metaregistry Sequence types and features ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 12 mappings to external registries for so with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL aberowl SO
AgroPortal agroportal SO
BioContext biocontext SO
BioPortal Prefixes bioportal SO
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.6bc7h9
Gene Ontology Registry go SO
Identifiers.org Identifiers.org logo miriam so
Name-to-Thing Name-to-Thing logo n2t so
OBO Foundry OBO Foundry logo obofoundry so
Ontology Lookup Service Ontology Lookup Service logo ols so
OntoBee ontobee SO
Prefix Commons prefixcommons so