biocontext:
  is_identifiers: false
  is_obo: false
  prefix: SGD
  uri_format: https://www.yeastgenome.org/locus/$1
edam:
  description: Identifier of an entry from the Saccharomyces genome database (SGD).
  name: SGD
  obsolete: false
  prefix: '2632'
example: S000002493
fairsharing:
  abbreviation: SGD
  description: The Saccharomyces Genome Database (SGD) provides comprehensive integrated
    biological information for the budding yeast Saccharomyces cerevisiae along with
    search and analysis tools to explore these data, enabling the discovery of functional
    relationships between sequence and gene products in fungi and higher organisms.
  homepage: http://www.yeastgenome.org/
  license: https://www.stanford.edu/site/terms
  name: Saccharomyces Genome Database
  prefix: FAIRsharing.pzvw40
  publications:
  - doi: 10.1093/database/bau075
    pubmed_id: 25052702
    title: Standardized description of scientific evidence using the Evidence Ontology
      (ECO).
  - doi: 10.1093/database/bat054
    pubmed_id: 23842463
    title: A guide to best practices for Gene Ontology (GO) manual annotation.
  - doi: 10.1093/database/bas001
    pubmed_id: 22434836
    title: CvManGO, a method for leveraging computational predictions to improve literature-based
      Gene Ontology annotations.
  - doi: 10.1093/nar/gkr1029
    pubmed_id: 22110037
    title: 'Saccharomyces Genome Database: the genomics resource of budding yeast.'
  - doi: 10.1002/9780470089941.et1104s01
    pubmed_id: null
    title: Using Model Organism Databases (MODs).
  - doi: 10.1093/database/bap001
    pubmed_id: 20157474
    title: New mutant phenotype data curation system in the Saccharomyces Genome Database.
  - doi: 10.1093/nar/gkl931
    pubmed_id: 17142221
    title: 'Expanded protein information at SGD: new pages and proteome browser.'
  - doi: 10.1002/yea.1400
    pubmed_id: 17001629
    title: 'Saccharomyces cerevisiae S288C genome annotation: a working hypothesis.'
  - doi: 10.1093/nar/gkj117
    pubmed_id: 16381907
    title: 'Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD)
      presenting an overview of the Saccharomyces cerevisiae genome.'
  - doi: 10.1093/bib/5.1.9
    pubmed_id: 15153302
    title: 'Saccharomyces genome database: underlying principles and organisation.'
  - doi: 10.1093/nar/gkt1158
    pubmed_id: 24265222
    title: Saccharomyces Genome Database provides new regulation data.
  - doi: 10.1534/g3.113.008995
    pubmed_id: 24374639
    title: 'The reference genome sequence of Saccharomyces cerevisiae: then and now.'
  - doi: 10.1093/database/bat012
    pubmed_id: 23487186
    title: 'The new modern era of yeast genomics: community sequencing and the resulting
      annotation of multiple Saccharomyces cerevisiae strains at the Saccharomyces
      Genome Database.'
  - doi: 10.1093/database/bat004
    pubmed_id: 23396302
    title: 'The YeastGenome app: the Saccharomyces Genome Database at your fingertips.'
  - doi: 10.1093/database/bar062
    pubmed_id: 22434830
    title: YeastMine - An integrated data warehouse for S. cerevisiae data as a multi-purpose
      tool-kit.
  - doi: 10.1093/database/bar057
    pubmed_id: 22434826
    title: 'Considerations for creating and annotating the budding yeast Genome Map
      at SGD: a progress report.'
  - doi: 10.1093/database/bar004
    pubmed_id: 21411447
    title: 'Using computational predictions to improve literature-based Gene Ontology
      annotations: a feasibility study.'
  - doi: 10.1093/nar/gkp917
    pubmed_id: 19906697
    title: Saccharomyces Genome Database provides mutant phenotype data.
  - doi: 10.1016/j.tim.2009.04.005
    pubmed_id: 19577472
    title: 'Functional annotations for the Saccharomyces cerevisiae genome: the knowns
      and the known unknowns.'
  - doi: 10.1093/nar/gkm909
    pubmed_id: 17982175
    title: 'Gene Ontology annotations at SGD: new data sources and annotation methods.'
  - doi: 10.1093/nar/gki023
    pubmed_id: 15608219
    title: 'Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources
      at the Saccharomyces Genome Database (SGD).'
  - doi: 10.1093/nar/gkh033
    pubmed_id: 14681421
    title: Saccharomyces Genome Database (SGD) provides tools to identify and analyze
      sequences from Saccharomyces cerevisiae and related sequences from other organisms.
  - doi: 10.1093/database/baw020
    pubmed_id: 26989152
    title: 'From one to many: expanding the Saccharomyces cerevisiae reference genome
      panel.'
  - doi: 10.1093/nar/gkg054
    pubmed_id: 12519985
    title: Saccharomyces Genome Database (SGD) provides biochemical and structural
      information for budding yeast proteins.
  - doi: 10.1016/s0076-6879(02)50972-1
    pubmed_id: 12073322
    title: Saccharomyces Genome Database
  - doi: 10.1101/pdb.top083840
    pubmed_id: 26631132
    title: 'The Saccharomyces Genome Database: A Tool for Discovery.'
  - doi: 10.1093/nar/30.1.69
    pubmed_id: 11752257
    title: Saccharomyces Genome Database (SGD) provides secondary gene annotation
      using the Gene Ontology (GO).
  - doi: 10.1093/nar/gkv1250
    pubmed_id: 26578556
    title: The Saccharomyces Genome Database Variant Viewer.
  - doi: 10.1101/pdb.prot088922
    pubmed_id: 26631126
    title: 'The Saccharomyces Genome Database: Exploring Genome Features and Their
      Annotations.'
  - doi: null
    pubmed_id: 9169866
    title: Genetic and physical maps of Saccharomyces cerevisiae.
  - doi: 10.1002/(SICI)1097-0061(199812)14:16<1453::AID-YEA348>3.0.CO;2-G
    pubmed_id: 9885151
    title: Expanding yeast knowledge online.
  - doi: 10.1101/pdb.prot088898
    pubmed_id: 26631123
    title: 'The Saccharomyces Genome Database: Exploring Biochemical Pathways and
      Mutant Phenotypes.'
  - doi: 10.1002/dvg.22862
    pubmed_id: 25997651
    title: Biocuration at the Saccharomyces Genome Database.
  - doi: 10.1371/journal.pone.0120671
    pubmed_id: 25781462
    title: AGAPE (Automated Genome Analysis PipelinE) for Pan-Genome Analysis of Saccharomyces
      cerevisiae.
  - doi: 10.1093/nar/gku975
    pubmed_id: 25313161
    title: The complex portal - an encyclopaedia of macromolecular complexes.
  - doi: 10.1101/pdb.prot088914
    pubmed_id: 26631125
    title: 'The Saccharomyces Genome Database: Gene Product Annotation of Function,
      Process, and Component.'
  - doi: 10.1101/pdb.prot088906
    pubmed_id: 26631124
    title: 'The Saccharomyces Genome Database: Advanced Searching Methods and Data
      Mining.'
  - doi: 10.1093/nar/29.1.80
    pubmed_id: 11125055
    title: Saccharomyces Genome Database provides tools to survey gene expression
      and functional analysis data.
  - doi: 10.1093/nar/26.1.73
    pubmed_id: 9399804
    title: 'SGD: Saccharomyces Genome Database.'
  - doi: 10.1093/nar/27.1.74
    pubmed_id: 9847146
    title: Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities
      and structure.
  - doi: 10.1126/science.282.5396.2022
    pubmed_id: 9851918
    title: 'Comparison of the complete protein sets of worm and yeast: orthology and
      divergence.'
  - doi: 10.1126/science.277.5330.1259
    pubmed_id: 9297238
    title: Yeast as a model organism.
  - doi: 10.1093/nar/28.1.77
    pubmed_id: 10592186
    title: Integrating functional genomic information into the Saccharomyces genome
      database.
  - doi: 10.1073/pnas.94.11.5506
    pubmed_id: 9159100
    title: 'Molecular linguistics: extracting information from gene and protein sequences.'
  - doi: null
    pubmed_id: 7660459
    title: Genetic nomenclature guide. Saccharomyces cerevisiae.
  subjects:
  - Epigenetics
  - Proteomics
  - Life Science
  - Transcriptomics
  twitter: yeastgenome
go:
  homepage: http://www.yeastgenome.org/
  name: Saccharomyces Genome Database
  prefix: SGD
  synonyms:
  - SGDID
  uri_format: https://www.yeastgenome.org/locus/$1
mappings:
  biocontext: SGD
  edam: '2632'
  fairsharing: FAIRsharing.pzvw40
  go: SGD
  miriam: sgd
  n2t: sgd
  ncbi: SGD
  prefixcommons: sgd
  re3data: r3d100010419
  uniprot: DB-0095
  wikidata: P3406
miriam:
  deprecated: false
  description: The Saccharomyces Genome Database (SGD) project collects information
    and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae.
  homepage: https://www.yeastgenome.org/
  id: '00000023'
  name: SGD
  namespaceEmbeddedInLui: false
  pattern: ^((S\d+$)|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?))$
  prefix: sgd
  providers:
  - code: CURATOR_REVIEW
    description: Bio2RDF
    homepage: http://sgd.bio2rdf.org/fct
    name: Bio2RDF
    uri_format: http://sgd.bio2rdf.org/describe/?url=http://bio2rdf.org/sgd:$1
  - code: agr
    description: SGD through the Alliance of Genome Resources
    homepage: https://www.alliancegenome.org
    name: SGD through the Alliance of Genome Resources
    uri_format: https://www.alliancegenome.org/gene/SGD:$1
  sampleId: S000003909
  uri_format: https://www.yeastgenome.org/locus/$1
n2t:
  description: The Saccharomyces Genome Database (SGD) project collects information
    and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae.
  example: S000003909
  homepage: https://www.yeastgenome.org/
  name: SGD
  namespaceEmbeddedInLui: false
  pattern: ^((S\d+$)|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?))$
  prefix: sgd
  uri_format: https://www.yeastgenome.org/locus/$1
name: Saccharomyces Genome Database
ncbi:
  example: L0000470
  homepage: http://www.yeastgenome.org/
  name: Saccharomyces Genome Database
  prefix: SGD
prefixcommons:
  description: The Saccharomyces Genome Database (SGD) collects and organizes information
    about the molecular biology and genetics of the yeast Saccharomyces cerevisiae.
    SGD contains a variety of biological information and tools with which to search
    and analyze it.
  example: S000006169
  homepage: http://www.yeastgenome.org/
  keywords:
  - eukaryotic
  - genome
  - nucleotide
  name: Saccharomyces Genome Database
  pattern: ^S\d+$
  prefix: sgd
  pubmed_ids:
  - '14681421'
  uri_format: http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=$1
publications:
- doi: 10.1002/(sici)1097-0061(199812)14:16<1453::aid-yea348>3.0.co;2-g
  pmc: PMC3037831
  pubmed: '9885151'
  title: Expanding yeast knowledge online.
  year: 1998
- doi: 10.1126/science.282.5396.2022
  pmc: PMC3057080
  pubmed: '9851918'
  title: 'Comparison of the complete protein sets of worm and yeast: orthology and
    divergence.'
  year: 1998
- doi: 10.1093/nar/27.1.74
  pmc: PMC148101
  pubmed: '9847146'
  title: Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities
    and structure.
  year: 1999
- doi: 10.1093/nar/26.1.73
  pmc: PMC147204
  pubmed: '9399804'
  title: 'SGD: Saccharomyces Genome Database.'
  year: 1998
- doi: 10.1126/science.277.5330.1259
  pmc: PMC3039837
  pubmed: '9297238'
  title: Yeast as a model organism.
  year: 1997
- pmc: PMC3057085
  pubmed: '9169866'
  title: Genetic and physical maps of Saccharomyces cerevisiae.
  year: 1997
- doi: 10.1073/pnas.94.11.5506
  pmc: PMC34160
  pubmed: '9159100'
  title: 'Molecular linguistics: extracting information from gene and protein sequences.'
  year: 1997
- pubmed: '7660459'
  title: Genetic nomenclature guide. Saccharomyces cerevisiae.
  year: 1995
- doi: 10.1093/database/baw020
  pmc: PMC4795930
  pubmed: '26989152'
  title: 'From one to many: expanding the Saccharomyces cerevisiae reference genome
    panel.'
  year: 2016
- doi: 10.1101/pdb.top083840
  pmc: PMC5673599
  pubmed: '26631132'
  title: 'The Saccharomyces Genome Database: A Tool for Discovery.'
  year: 2015
- doi: 10.1101/pdb.prot088922
  pmc: PMC5673602
  pubmed: '26631126'
  title: 'The Saccharomyces Genome Database: Exploring Genome Features and Their Annotations.'
  year: 2015
- doi: 10.1101/pdb.prot088914
  pmc: PMC5673600
  pubmed: '26631125'
  title: 'The Saccharomyces Genome Database: Gene Product Annotation of Function,
    Process, and Component.'
  year: 2015
- doi: 10.1101/pdb.prot088906
  pmc: PMC5673598
  pubmed: '26631124'
  title: 'The Saccharomyces Genome Database: Advanced Searching Methods and Data Mining.'
  year: 2015
- doi: 10.1101/pdb.prot088898
  pmc: PMC5673601
  pubmed: '26631123'
  title: 'The Saccharomyces Genome Database: Exploring Biochemical Pathways and Mutant
    Phenotypes.'
  year: 2015
- doi: 10.1093/nar/gkv1250
  pmc: PMC4702884
  pubmed: '26578556'
  title: The Saccharomyces Genome Database Variant Viewer.
  year: 2015
- doi: 10.1002/dvg.22862
  pmc: PMC4545726
  pubmed: '25997651'
  title: Biocuration at the Saccharomyces genome database.
  year: 2015
- doi: 10.1371/journal.pone.0120671
  pmc: PMC4363492
  pubmed: '25781462'
  title: AGAPE (Automated Genome Analysis PipelinE) for pan-genome analysis of Saccharomyces
    cerevisiae.
  year: 2015
- doi: 10.1093/nar/gku975
  pmc: PMC4384031
  pubmed: '25313161'
  title: The complex portal--an encyclopaedia of macromolecular complexes.
  year: 2014
- doi: 10.1093/database/bau075
  pmc: PMC4105709
  pubmed: '25052702'
  title: Standardized description of scientific evidence using the Evidence Ontology
    (ECO).
  year: 2014
- doi: 10.1534/g3.113.008995
  pmc: PMC3962479
  pubmed: '24374639'
  title: 'The reference genome sequence of Saccharomyces cerevisiae: then and now.'
  year: 2014
- doi: 10.1093/nar/gkt1158
  pmc: PMC3965049
  pubmed: '24265222'
  title: Saccharomyces genome database provides new regulation data.
  year: 2013
- doi: 10.1093/database/bat054
  pmc: PMC3706743
  pubmed: '23842463'
  title: A guide to best practices for Gene Ontology (GO) manual annotation.
  year: 2013
- doi: 10.1093/database/bat012
  pmc: PMC3595989
  pubmed: '23487186'
  title: 'The new modern era of yeast genomics: community sequencing and the resulting
    annotation of multiple Saccharomyces cerevisiae strains at the Saccharomyces Genome
    Database.'
  year: 2013
- doi: 10.1093/database/bat004
  pmc: PMC3567487
  pubmed: '23396302'
  title: 'The YeastGenome app: the Saccharomyces Genome Database at your fingertips.'
  year: 2013
- doi: 10.1093/database/bas001
  pmc: PMC3308158
  pubmed: '22434836'
  title: CvManGO, a method for leveraging computational predictions to improve literature-based
    Gene Ontology annotations.
  year: 2012
- doi: 10.1093/database/bar062
  pmc: PMC3308152
  pubmed: '22434830'
  title: YeastMine--an integrated data warehouse for Saccharomyces cerevisiae data
    as a multipurpose tool-kit.
  year: 2012
- doi: 10.1093/database/bar057
  pmc: PMC3308148
  pubmed: '22434826'
  title: 'Considerations for creating and annotating the budding yeast Genome Map
    at SGD: a progress report.'
  year: 2012
- doi: 10.1093/nar/gkr1029
  pmc: PMC3245034
  pubmed: '22110037'
  title: 'Saccharomyces Genome Database: the genomics resource of budding yeast.'
  year: 2011
- doi: 10.1093/database/bar004
  pmc: PMC3067894
  pubmed: '21411447'
  title: 'Using computational predictions to improve literature-based Gene Ontology
    annotations: a feasibility study.'
  year: 2011
- doi: 10.1093/database/bap001
  pmc: PMC2790299
  pubmed: '20157474'
  title: New mutant phenotype data curation system in the Saccharomyces Genome Database.
  year: 2009
- doi: 10.1093/nar/gkp917
  pmc: PMC2808950
  pubmed: '19906697'
  title: Saccharomyces Genome Database provides mutant phenotype data.
  year: 2009
- doi: 10.1016/j.tim.2009.04.005
  pmc: PMC3057094
  pubmed: '19577472'
  title: 'Functional annotations for the Saccharomyces cerevisiae genome: the knowns
    and the known unknowns.'
  year: 2009
- doi: 10.1093/nar/gkm909
  pmc: PMC2238894
  pubmed: '17982175'
  title: 'Gene Ontology annotations at SGD: new data sources and annotation methods.'
  year: 2007
- doi: 10.1093/nar/gkl931
  pmc: PMC1669759
  pubmed: '17142221'
  title: 'Expanded protein information at SGD: new pages and proteome browser.'
  year: 2006
- doi: 10.1002/yea.1400
  pmc: PMC3040122
  pubmed: '17001629'
  title: 'Saccharomyces cerevisiae S288C genome annotation: a working hypothesis.'
  year: 2006
- doi: 10.1093/nar/gkj117
  pmc: PMC1347479
  pubmed: '16381907'
  title: 'Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD)
    presenting an overview of the Saccharomyces cerevisiae genome.'
  year: 2006
- doi: 10.1093/nar/gki023
  pmc: PMC539977
  pubmed: '15608219'
  title: 'Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources
    at the Saccharomyces Genome Database (SGD).'
  year: 2005
- doi: 10.1093/bib/5.1.9
  pmc: PMC3037832
  pubmed: '15153302'
  title: 'Saccharomyces genome database: underlying principles and organisation.'
  year: 2004
- doi: 10.1093/nar/gkh033
  pmc: PMC308767
  pubmed: '14681421'
  title: Saccharomyces Genome Database (SGD) provides tools to identify and analyze
    sequences from Saccharomyces cerevisiae and related sequences from other organisms.
  year: 2004
- doi: 10.1093/nar/gkg054
  pmc: PMC165501
  pubmed: '12519985'
  title: Saccharomyces Genome Database (SGD) provides biochemical and structural information
    for budding yeast proteins.
  year: 2003
- doi: 10.1016/s0076-6879(02)50972-1
  pubmed: '12073322'
  title: Saccharomyces Genome Database.
  year: 2002
- doi: 10.1093/nar/30.1.69
  pmc: PMC99086
  pubmed: '11752257'
  title: Saccharomyces Genome Database (SGD) provides secondary gene annotation using
    the Gene Ontology (GO).
  year: 2002
- doi: 10.1093/nar/29.1.80
  pmc: PMC29796
  pubmed: '11125055'
  title: Saccharomyces Genome Database provides tools to survey gene expression and
    functional analysis data.
  year: 2001
- doi: 10.1093/nar/28.1.77
  pmc: PMC102447
  pubmed: '10592186'
  title: Integrating functional genomic information into the Saccharomyces genome
    database.
  year: 2000
- doi: 10.1002/9780470089941.et1104s01
  title: Using Model Organism Databases (MODs)
  year: 2009
re3data:
  description: The Saccharomyces Genome Database (SGD) provides comprehensive integrated
    biological information for the budding yeast Saccharomyces cerevisiae along with
    search and analysis tools to explore these data, enabling the discovery of functional
    relationships between sequence and gene products in fungi and higher organisms.
  homepage: https://www.yeastgenome.org
  name: Saccharomyces Genome Database
  prefix: r3d100010419
  synonyms:
  - SGD
  xrefs:
    fairsharing: FAIRsharing.pzvw40
    nif: 0000-03456
    omics: '01661'
    scr: 004694
uniprot:
  abbreviation: SGD
  category: Organism-specific databases
  homepage: https://www.yeastgenome.org/
  name: Saccharomyces Genome Database
  prefix: DB-0095
  publications:
  - doi: 10.1093/nar/gkr1029
    pubmed: '22110037'
  uri_format: https://www.yeastgenome.org/locus/$1
wikidata:
  database: Q3460832
  description: identifier for a genetic element in the Saccharomyces Genome Database
  example:
  - S000001582
  homepage: http://www.yeastgenome.org
  name: Saccharomyces Genome Database ID
  pattern: ^S\d{9}$
  prefix: P3406
  uri_format: http://www.yeastgenome.org/locus/$1/overview