Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with bacterial genomes.

comparative genomics genome genomics
Paul Flicek   0000-0002-3897-7955
Pattern for Local Unique Identifiers

Local identifiers in Ensembl Bacteria should match this regular expression:

Example Local Unique Identifier
MU9_3181   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Ensembl Bacteria should match this regular expression:

Example CURIE

A summary of the relations in the Bioregistry schema can be found here.

Part Of (bfo:0000050 )
Metaregistry Ensembl Bacteria

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext ENSEMBL.BACTERIA
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.zsgmvd
Integbio Integbio logo integbio nbdc00433
Identifiers.org Identifiers.org logo miriam ensembl.bacteria
N2T Name-to-Thing logo n2t ensembl.bacteria
Prefix Commons Prefix Commons logo prefixcommons ensembl.bacteria
re3data Registry of Research Data Repositories logo re3data r3d100011195
UniProt UniProt Cross-ref database logo uniprot DB-0147

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier MU9_3181 is used to demonstrate the providers available for Ensembl Bacteria. A guide for curating additional providers can be found here.

Name Metaprefix URI
Ensembl Bacteria ensembl.bacteria https://bacteria.ensembl.org/id/MU9_3181
Bioregistry bioregistry https://bioregistry.io/ensembl.bacteria:MU9_3181
Identifiers.org miriam https://identifiers.org/ensembl.bacteria:MU9_3181
Name-to-Thing n2t https://n2t.net/ensembl.bacteria:MU9_3181
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/ensembl.bacteria:MU9_3181