Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with bacterial genomes.

comparative genomics genome genomics
Homepage @ensemblgenomes
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Ensembl Bacteria should match this regular expression:

Example Local Unique Identifier
MU9_3181   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Ensembl Bacteria should match this regular expression:

Example CURIE
Part Of
Metaregistry Ensembl Bacteria

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for ensembl.bacteria with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext ENSEMBL.BACTERIA
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.zsgmvd
Identifiers.org Identifiers.org logo miriam ensembl.bacteria
Name-to-Thing Name-to-Thing logo n2t ensembl.bacteria
Prefix Commons prefixcommons ensembl.bacteria
Registry of Research Data Repositories re3data r3d100011195
UniProt Cross-ref database uniprot DB-0147

Providers are various services that resolve CURIEs to URLs. The example CURIE ensembl.bacteria:MU9_3181 is used to demonstrate the provides available for ensembl.bacteria. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Ensembl Bacteria ensembl.bacteria https://bacteria.ensembl.org/id/MU9_3181
Bioregistry bioregistry https://bioregistry.io/ensembl.bacteria:MU9_3181
Identifiers.org miriam https://identifiers.org/ensembl.bacteria:MU9_3181
Name-to-Thing n2t https://n2t.net/ensembl.bacteria:MU9_3181