Registry Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi.

Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with fungal genomes.

Prefix
ensembl.fungi
Keywords
comparative genomics genome genomics
Links
Homepage @ensemblgenomes
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi. should match this regular expression:
^[A-Z-a-z0-9]+$

Example Local Unique Identifier
CADAFLAT00006211   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi. should match this regular expression:
^ensembl\.fungi:[A-Z-a-z0-9]+$

Example CURIE
ensembl.fungi:CADAFLAT00006211
Publications
Ontology

A summary of the relations in the Bioregistry schema can be found here.

Part Of (bfo:0000050 )
ensembl
Metaregistry Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi.

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for this resource with 6 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext ENSEMBL.FUNGI
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.bg5xqs
GO Gene Ontology Registry logo go EnsemblFungi
Integbio Integbio logo integbio nbdc00434
Identifiers.org Identifiers.org logo miriam ensembl.fungi
N2T Name-to-Thing logo n2t ensembl.fungi
Prefix Commons Prefix Commons logo prefixcommons ensembl.fungi
re3data Registry of Research Data Repositories logo re3data r3d100011196
UniProt UniProt Cross-ref database logo uniprot DB-0148
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE ensembl.fungi:CADAFLAT00006211 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi. ensembl.fungi https://fungi.ensembl.org/id/CADAFLAT00006211
Bioregistry bioregistry https://bioregistry.io/ensembl.fungi:CADAFLAT00006211
Identifiers.org miriam https://identifiers.org/ensembl.fungi:CADAFLAT00006211
Name-to-Thing n2t https://n2t.net/ensembl.fungi:CADAFLAT00006211
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/ensembl.fungi:CADAFLAT00006211