Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with fungal genomes.

Prefix

ensembl.fungi

Keywords

genome genome annotation databases genome/gene sequence

Links

Homepage

Publications

2020 Ensembl Genomes 2020-enabling non-vertebrate genomic research

2015 Ensembl Genomes 2016: more genomes, more complexity

https://bioregistry.io/pubmed:19884133

Pattern for Local Unique Identifiers

Local identifiers in Ensembl Fungi should match this regular expression:
^[A-Z-a-z0-9]+$

Example Local Unique Identifier

CADAFLAT00006211   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Ensembl Fungi should match this regular expression:
^ensembl\.fungi:[A-Z-a-z0-9]+$

Example CURIE

ensembl.fungi:CADAFLAT00006211

Contact

Paul Flicek   0000-0002-3897-7955

Identifier Space Owner

European Bioinformatics Institute

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 8 mappings to external registries with 5 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier CADAFLAT00006211 is used to demonstrate the providers available for Ensembl Fungi. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.