Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with fungal genomes.

Prefix

ensembl.fungi

Keywords

comparative genomics genome genomics

Links

Homepage

Contact

Paul Flicek   0000-0002-3897-7955

Pattern for Local Unique Identifiers

Local identifiers in Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi. should match this regular expression:
^[A-Z-a-z0-9]+$

Example Local Unique Identifier

CADAFLAT00006211   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi. should match this regular expression:
^ensembl\.fungi:[A-Z-a-z0-9]+$

Example CURIE

ensembl.fungi:CADAFLAT00006211

Publications

• 2020 Ensembl Genomes 2020-enabling non-vertebrate genomic research
• 2015 Ensembl Genomes 2016: more genomes, more complexity

A summary of the relations in the Bioregistry schema can be found here.

Part Of (bfo:0000050 )

ensembl

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for this resource with 6 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier CADAFLAT00006211 is used to demonstrate the providers available for Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi.. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.