Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references genes.

Prefix

rgd

Alternative Prefixes

RGD

Keywords

behavior biomedical science comparative genomics congenic rat data analysis service disease dna est faseb list function gene genetic genome genomic genomics genotype gold standard human immunology inbred rat strain knockout map marker model organism molecular medicine mouse mutant ontology organism supplier pathway phenomics phenotype physiology proteomics qtl quantitative genetics rat recombinant inbred rat sequence strain translational medicine variation veterinary medicine

License

CC-BY-4.0

Links

Homepage

Contact

Jennifer R Smith   0000-0002-6443-9376

Pattern for Local Unique Identifiers

Local identifiers in Rat Genome Database should match this regular expression:
^\d{4,}$

Example Local Unique Identifier

7499841   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Rat Genome Database should match this regular expression:
^rgd:\d{4,}$

Example CURIE

rgd:7499841

Publications

• 2022 MOET: a web-based gene set enrichment tool at the Rat Genome Database for multiontology and multispecies analyses
• 2021 The Rat Genome Database (RGD) facilitates genomic and phenotypic data integration across multiple species for biomedical research
• 2020 The Year of the Rat: The Rat Genome Database at 20: a multi-species knowledgebase and analysis platform
• 2019 Rat Genome Databases, Repositories, and Tools
• 2019 Rat Genome Assemblies, Annotation, and Variant Repository
• 2019 The Rat: A Model Used in Biomedical Research
• 2019 Quantitative phenotype analysis to identify, validate and compare rat disease models
• 2019 Integrated curation and data mining for disease and phenotype models at the Rat Genome Database
• 2018 A Primer for the Rat Genome Database (RGD)
• 2017 Rat Genome and Model Resources
• 2016 Exploring human disease using the Rat Genome Database
• 2015 Disease, Models, Variants and Altered Pathways-Journeying RGD Through the Magnifying Glass
• 2016 Comprehensive coverage of cardiovascular disease data in the disease portals at the Rat Genome Database
• 2016 The Disease Portals, disease-gene annotation and the RGD disease ontology at the Rat Genome Database
• 2014 The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease
• 2014 Disease pathways at the Rat Genome Database Pathway Portal: genes in context-a network approach to understanding the molecular mechanisms of disease
• 2013 PhenoMiner: quantitative phenotype curation at the rat genome database
• https://bioregistry.io/pubmed:23434633
• 2009 The rat genome database curators: who, what, where, why
• https://bioregistry.io/pubmed:18996890
• 2006 The Rat Genome Database, update 2007--easing the path from disease to data and back again
• 1999 A high-density integrated genetic linkage and radiation hybrid map of the laboratory rat

A summary of the relations in the Bioregistry schema can be found here.

In Collection

Global Biodata Coalition - Global Core Biodata Resources

The metaregistry provides mappings between the Bioregistry and other registries. There are 18 mappings to external registries for this resource with 8 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 7499841 is used to demonstrate the providers available for Rat Genome Database. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.