appears_in: []
depends_on: []
deprecated: false
description: Rat Genome Database seeks to collect, consolidate, and integrate rat
  genomic and genetic data with curated functional and physiological data and make
  these data widely available to the scientific community. This collection references
  genes.
download_json: https://w3id.org/biopragmatics/resources/rgd/rgd.json.gz
download_obo: https://w3id.org/biopragmatics/resources/rgd/rgd.obo
download_owl: https://w3id.org/biopragmatics/resources/rgd/rgd.owl.gz
example: '7499841'
example_extras: []
homepage: https://rgd.mcw.edu/
keywords:
- behavior
- bioresource
- comparative genomics
- congenic rat
- data analysis service
- disease
- dna
- est
- faseb list
- function
- gene
- genetic
- genetic variation
- genome
- genome/gene
- genomic
- genotype
- gold standard
- health/disease
- human
- immunology
- inbred rat strain
- interaction/pathway
- knockout
- map
- marker
- model organism
- mouse
- mutant
- ontology
- ontology/terminology/nomenclature
- organism
- organism supplier
- organism-specific databases
- pathway
- phenotype
- physiology
- proteomics
- qtl
- rat
- recombinant inbred rat
- repository
- sequence
- strain
- variation
license: CC-BY-4.0
logo: https://rgd.mcw.edu/rgdweb//common/images/rgd_logo.jpg
mappings:
  biocontext: RGD
  cellosaurus: RGD
  edam: '2620'
  go: RGD
  integbio: nbdc00188
  miriam: rgd
  n2t: rgd
  ncbi: RGD
  pathguide: '267'
  prefixcommons: rgd
  re3data: r3d100010417
  rrid: RGD
  togoid: Rgd
  uniprot: DB-0091
  wikidata: P3853
name: Rat Genome Database
namespace_in_lui: false
pattern: ^\d{4,}$
preferred_prefix: rgd
prefix: rgd
providers:
- code: agr
  description: RGD through the Alliance of Genome Resources
  homepage: https://www.alliancegenome.org
  name: RGD through the Alliance of Genome Resources
  uri_format: https://www.alliancegenome.org/gene/RGD:$1
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/rgd:$1
publications:
- doi: 10.1093/database/baae132
  pmc: PMC11753291
  pubmed: '39841812'
  title: Standardized pipelines support and facilitate integration of diverse datasets
    at the Rat Genome Database
- doi: 10.1093/genetics/iyac005
  pmc: PMC8982048
  pubmed: '35380657'
  title: 'MOET: a web-based gene set enrichment tool at the Rat Genome Database for
    multiontology and multispecies analyses'
  year: 2022
- doi: 10.1007/s00335-021-09932-x
  pmc: PMC8570235
  pubmed: '34741192'
  title: The Rat Genome Database (RGD) facilitates genomic and phenotypic data integration
    across multiple species for biomedical research
  year: 2021
- doi: 10.1093/nar/gkz1041
  pmc: PMC7145519
  pubmed: '31713623'
  title: 'The Year of the Rat: The Rat Genome Database at 20: a multi-species knowledgebase
    and analysis platform'
  year: 2020
- doi: 10.1007/978-1-4939-9581-3_3
  pubmed: '31228152'
  title: Rat Genome Databases, Repositories, and Tools
  year: 2019
- doi: 10.1007/978-1-4939-9581-3_2
  pubmed: '31228151'
  title: Rat Genome Assemblies, Annotation, and Variant Repository
  year: 2019
- doi: 10.1007/978-1-4939-9581-3_1
  pubmed: '31228150'
  title: 'The Rat: A Model Used in Biomedical Research'
  year: 2019
- doi: 10.1093/database/baz037
  pmc: PMC6444380
  pubmed: '30938777'
  title: Quantitative phenotype analysis to identify, validate and compare rat disease
    models
  year: 2019
- doi: 10.1093/database/baz014
  pmc: PMC6369425
  pubmed: '30753478'
  title: Integrated curation and data mining for disease and phenotype models at the
    Rat Genome Database
  year: 2019
- doi: 10.1007/978-1-4939-7737-6_8
  pmc: PMC6487669
  pubmed: '29761460'
  title: A Primer for the Rat Genome Database (RGD)
  year: 2018
- doi: 10.1093/ilar/ilw041
  pmc: PMC6057551
  pubmed: '28838068'
  title: Rat Genome and Model Resources
  year: 2017
- doi: 10.1242/dmm.026021
  pmc: PMC5087824
  pubmed: '27736745'
  title: Exploring human disease using the Rat Genome Database
  year: 2016
- doi: 10.1016/j.csbj.2015.11.006
  pmc: PMC4700298
  pubmed: '27602200'
  title: Disease, Models, Variants and Altered Pathways-Journeying RGD Through the
    Magnifying Glass
  year: 2015
- doi: 10.1152/physiolgenomics.00046.2016
  pmc: PMC5005459
  pubmed: '27287925'
  title: Comprehensive coverage of cardiovascular disease data in the disease portals
    at the Rat Genome Database
  year: 2016
- doi: 10.1093/database/baw034
  pmc: PMC4805243
  pubmed: '27009807'
  title: The Disease Portals, disease-gene annotation and the RGD disease ontology
    at the Rat Genome Database
  year: 2016
- doi: 10.1093/nar/gku1026
  pmc: PMC4383884
  pubmed: '25355511'
  title: 'The Rat Genome Database 2015: genomic, phenotypic and environmental variations
    and disease'
  year: 2014
- doi: 10.1186/s40246-014-0017-8
  pmc: PMC4191248
  pubmed: '25265995'
  title: 'Disease pathways at the Rat Genome Database Pathway Portal: genes in context-a
    network approach to understanding the molecular mechanisms of disease'
  year: 2014
- doi: 10.1093/database/bat015
  pmc: PMC3630803
  pubmed: '23603846'
  title: 'PhenoMiner: quantitative phenotype curation at the rat genome database'
  year: 2013
- pubmed: '23434633'
- pubmed: '21478484'
- doi: 10.1371/journal.pcbi.1000582
  pmc: PMC2775909
  pubmed: '19956751'
  title: 'The rat genome database curators: who, what, where, why'
  year: 2009
- pubmed: '18996890'
- doi: 10.1093/nar/gkl988
  pmc: PMC1761441
  pubmed: '17151068'
  title: The Rat Genome Database, update 2007--easing the path from disease to data
    and back again
  year: 2006
- pubmed: '10400928'
  title: A high-density integrated genetic linkage and radiation hybrid map of the
    laboratory rat
  year: 1999
synonyms:
- RGD
uri_format: http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=$1
