FlyBase is the database of the Drosophila Genome Projects and of associated literature.

Prefix

flybase

Preferred Prefix

FlyBase

Alternative Prefixes

FlyBase FB

Keywords

allele anatomy bibliography/documents bio.tools biocuration bioinformatics bioresource blast cdna cdna/est cell line chromosomal aberration clone library comparative genomics controlled term crispr digital curation dna drosophilidae expression expression data faseb list functional genomics gene gene model annotation gene name genetic variation genetics genome genome/gene genomics genotype go-term enrichment data health/disease image image collection image/movie insertion sequence interaction interaction/pathway life science life-cycle literature curation molecular biology molecular genetics molecular interaction molecular_function movie mutant ontology ontology/terminology/nomenclature organism organism-specific databases orthologous phenotype prediction and recognition protein protein interactions recombinant dna regulatory ncrna-mediated post-transcriptional gene silencing regulatory region repository rna rna-seq sequence sequence feature single balancer stock taxonomy transposable element video resource

License

CC-BY-4.0

Links

Homepage OBO OWL OBO JSON

Publications

1999 The FlyBase database of the Drosophila Genome Projects and community literature

1998 FlyBase: a Drosophila database

1997 FlyBase: a Drosophila database. The FlyBase consortium

1996 FlyBase: the Drosophila database

https://bioregistry.io/pubmed:8578603

1994 FlyBase--the Drosophila database. The FlyBase Consortium

1994 FlyBase--the Drosophila genetic database

https://bioregistry.io/pubmed:38301657

2021 FlyBase: updates to the Drosophila melanogaster knowledge base

2019 FlyBase 2.0: the next generation

2018 Using FlyBase to Find Functionally Related Drosophila Genes

2016 Exploring FlyBase Data Using QuickSearch

2016 FlyBase at 25: looking to the future

2016 FlyBase portals to human disease research using Drosophila models

2015 FlyBase: establishing a Gene Group resource for Drosophila melanogaster

2015 Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

2015 Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

2014 FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations

2013 FlyBase 102--advanced approaches to interrogating FlyBase

2012 Directly e-mailing authors of newly published papers encourages community curation

2011 FlyBase 101--the basics of navigating FlyBase

2008 FlyBase: enhancing Drosophila Gene Ontology annotations

2008 FlyBase : a database for the Drosophila research community

2007 FlyBase: integration and improvements to query tools

2006 FlyBase: genomes by the dozen

2006 FlyBase: anatomical data, images and queries

2005 FlyBase: genes and gene models

2003 The FlyBase database of the Drosophila genome projects and community literature

2002 The FlyBase database of the Drosophila genome projects and community literature

https://bioregistry.io/pubmed:11465064

Pattern for Local Unique Identifiers

Local unique identifiers in FlyBase Gene should match this regular expression:
^FB\w{2}\d{7}$

Example Local Unique Identifier

FBgn0011293   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from FlyBase Gene should match this regular expression:
^FlyBase:FB\w{2}\d{7}$

Example CURIE

FlyBase:FBgn0011293

Contact

Victoria K. Jenkins   0000-0002-1567-7626

A summary of the relations in the Bioregistry schema can be found here.

In Collection (2)

Global Biodata Coalition - Global Core Biodata Resources Synapse.org external links

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 14 mappings to external registries with 9 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier FBgn0011293 is used to demonstrate the providers available for FlyBase Gene. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.