The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences.

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Nucleotide Sequence Database should match this regular expression:

Example Local Unique Identifier
X58356   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Nucleotide Sequence Database should match this regular expression:

Example CURIE

A summary of the relations in the Bioregistry schema can be found here.

Has incoming URI collisions

The following resources share a URI format string with insdc:

When generating an extended prefix map, their respective CURIE prefixes and URI prefixes are merged into the record for insdc. If you believe that these are distinct semantic spaces and should not be merged, please open a new issue on the Bioregistry issue tracker for discussion.

Metaregistry Nucleotide Sequence Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext INSDC
Integbio Integbio logo integbio nbdc02567 logo miriam insdc
N2T Name-to-Thing logo n2t insdc
Prefix Commons Prefix Commons logo prefixcommons insdc
TogoID togoid Insdc

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier X58356 is used to demonstrate the providers available for Nucleotide Sequence Database. A guide for curating additional providers can be found here.

Name Metaprefix URI
Nucleotide Sequence Database insdc
Bioregistry bioregistry miriam
Name-to-Thing n2t
National Center for Biotechnology Information Registry ncbi
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF
ebi INSDC through European Nucleotide Archive (ENA)
ncbi INSDC through Nucleotide database at NCBI