Registry Nucleotide Sequence Database
The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences.
- Prefix
insdc- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in Nucleotide Sequence Database should match this regular expression:
^([A-Z]\d{5}|[A-Z]{2}\d{6}|[A-Z]{4}\d{8}|[A-J][A-Z]{2}\d{5})(\.\d+)?$ - Example Local Unique Identifier
- X58356 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Nucleotide Sequence Database should match this regular expression:
^insdc:([A-Z]\d{5}|[A-Z]{2}\d{6}|[A-Z]{4}\d{8}|[A-J][A-Z]{2}\d{5})(\.\d+)?$ - Example CURIE
- insdc:X58356
Metaregistry
The metaregistry provides mappings between the Bioregistry and other registries. There are
3 mappings to external registries for insdc.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
Identifiers.org
|
miriam |
insdc
|
Name-to-Thing
|
n2t |
insdc
|
| Prefix Commons | prefixcommons |
INSDC
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
insdc:X58356 is used to demonstrate the provides available for
insdc. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| Nucleotide Sequence Database | insdc |
https://www.ncbi.nlm.nih.gov/nuccore/X58356 |
| Bioregistry | bioregistry |
https://bioregistry.io/insdc:X58356 |
| Identifiers.org | miriam |
https://identifiers.org/insdc:X58356 |
| Name-to-Thing | n2t |
https://n2t.net/insdc:X58356 |
Extra Providers
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
| CURATOR_REVIEW | INSDC through DDBJ | http://getentry.ddbj.nig.ac.jp/getentry?database=ddbj&accession_number=X58356 |
| ebi | INSDC through European Nucleotide Archive (ENA) | https://www.ebi.ac.uk/ena/data/view/X58356 |
| ncbi | INSDC through Nucleotide database at NCBI | https://www.ncbi.nlm.nih.gov/nuccore/X58356 |