Registry Nucleotide Sequence Database

The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences.

Prefix
insdc
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Nucleotide Sequence Database should match this regular expression:
^([A-Z]\d{5}|[A-Z]{2}\d{6}|[A-Z]{4}\d{8}|[A-J][A-Z]{2}\d{5})(\.\d+)?$

Example Local Unique Identifier
X58356   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Nucleotide Sequence Database should match this regular expression:
^insdc:([A-Z]\d{5}|[A-Z]{2}\d{6}|[A-Z]{4}\d{8}|[A-J][A-Z]{2}\d{5})(\.\d+)?$

Example CURIE
insdc:X58356
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for insdc.

Registry Name Metaprefix External Prefix
Identifiers.org miriam insdc
Name-to-Thing n2t insdc
Prefix Commons prefixcommons INSDC
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE insdc:X58356 is used to demonstrate the provides available for insdc. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Nucleotide Sequence Database insdc https://www.ncbi.nlm.nih.gov/nuccore/X58356
Bioregistry bioregistry https://bioregistry.io/insdc:X58356
Identifiers.org miriam https://identifiers.org/insdc:X58356
Name-to-Thing n2t https://n2t.net/insdc:X58356
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
CURATOR_REVIEW INSDC through DDBJ http://getentry.ddbj.nig.ac.jp/getentry?database=ddbj&accession_number=X58356
ebi INSDC through European Nucleotide Archive (ENA) https://www.ebi.ac.uk/ena/data/view/X58356
ncbi INSDC through Nucleotide database at NCBI https://www.ncbi.nlm.nih.gov/nuccore/X58356