The Nucleotide database is a collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery.

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Nucleotide should match this regular expression:

Example Local Unique Identifier
880798137   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Nucleotide should match this regular expression:

Example CURIE

A summary of the relations in the Bioregistry schema can be found here.

Has URI collision with (bioregistry.schema:0000016 )

This resource shares one or more URI format strings with insdc .

Therefore, when generating an extended prefix map, nucleotide, its CURIE prefix synonyms, and its URI prefix synonyms are merged into the record for insdc . If you believe that these are two distinct semantic spaces and should not be merged, please open a new issue on the Bioregistry issue tracker for discussion.

Metaregistry Nucleotide

The metaregistry provides mappings between the Bioregistry and other registries. There are 2 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
Integbio Integbio logo integbio nbdc00600 logo miriam nucleotide

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 880798137 is used to demonstrate the providers available for Nucleotide. A guide for curating additional providers can be found here.

Name Metaprefix URI
Nucleotide nucleotide
Bioregistry bioregistry miriam