Registry 16S rRNA gene database
A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies.
- Prefix
greengenes- Keywords
- genetics life science rna
- Links
- Homepage
- Contact
- Gary L Andersen 0000-0002-1618-9827
- Pattern for Local Unique Identifiers
-
Local identifiers in 16S rRNA gene database should match this regular expression:
^\d+$ - Example Local Unique Identifier
- 100000 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from 16S rRNA gene database should match this regular expression:
^greengenes:\d+$ - Example CURIE
- greengenes:100000
- Publications
- 2006 Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.
Metaregistry 16S rRNA gene database
The metaregistry provides mappings between the Bioregistry and other registries. There are
7 mappings to external registries for greengenes with
3 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
GREENGENES
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.bpxgb6
|
|
Identifiers.org
|
miriam |
greengenes
|
|
Name-to-Thing
|
n2t |
greengenes
|
|
| National Center for Biotechnology Information Registry | ncbi |
Greengenes
|
|
| Prefix Commons | prefixcommons |
greengenes
|
|
| Registry of Research Data Repositories | re3data |
r3d100010549
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
greengenes:100000
is used to demonstrate the provides available for
greengenes. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.