Registry 16S rRNA gene database
A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies.
- Prefix
greengenes- Keywords
- genetics life science rna
- Links
- Homepage
- Contact
- Gary L Andersen 0000-0002-1618-9827
- Pattern for Local Unique Identifiers
-
Local identifiers in 16S rRNA gene database should match this regular expression:
^\d+$ - Example Local Unique Identifier
- 100000 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from 16S rRNA gene database should match this regular expression:
^greengenes:\d+$ - Example CURIE
- greengenes:100000
- Publications
Metaregistry 16S rRNA gene database
The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 3 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
GREENGENES
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.bpxgb6
|
|
Identifiers.org
|
miriam |
greengenes
|
|
N2T
|
n2t |
greengenes
|
|
NCBI
|
ncbi |
Greengenes
|
|
Prefix Commons
|
prefixcommons |
greengenes
|
|
re3data
|
re3data |
r3d100010549
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
None:100000
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Extra Providers
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/greengenes:100000 |