A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies.

genetics life science rna
Gary L Andersen   0000-0002-1618-9827
Pattern for Local Unique Identifiers

Local identifiers in 16S rRNA gene database should match this regular expression:

Example Local Unique Identifier
100000   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from 16S rRNA gene database should match this regular expression:

Example CURIE
Metaregistry 16S rRNA gene database

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext GREENGENES
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.bpxgb6
Integbio Integbio logo integbio nbdc01824
Identifiers.org Identifiers.org logo miriam greengenes
N2T Name-to-Thing logo n2t greengenes
NCBI National Center for Biotechnology Information Registry logo ncbi Greengenes
Prefix Commons Prefix Commons logo prefixcommons greengenes
re3data Registry of Research Data Repositories logo re3data r3d100010549

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 100000 is used to demonstrate the providers available for 16S rRNA gene database. A guide for curating additional providers can be found here.

Name Metaprefix URI
16S rRNA gene database greengenes http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=100000
Bioregistry bioregistry https://bioregistry.io/greengenes:100000
Identifiers.org miriam https://identifiers.org/greengenes:100000
Name-to-Thing n2t https://n2t.net/greengenes:100000
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/greengenes:100000