A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies.
greengenes
Local identifiers in 16S rRNA gene database should match this
regular expression:
^\d+$
Compact URIs (CURIEs) constructed from 16S rRNA gene database should match
this regular expression:
^greengenes:\d+$
The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 3 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
GREENGENES
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.bpxgb6
|
|
Identifiers.org
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miriam |
greengenes
|
|
N2T
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n2t |
greengenes
|
|
NCBI
|
ncbi |
Greengenes
|
|
Prefix Commons
|
prefixcommons |
greengenes
|
|
re3data
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re3data |
r3d100010549
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
None:100000
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/greengenes:100000 |