A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies.

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in 16S rRNA gene database should match this regular expression:

Example Local Unique Identifier
100000   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from 16S rRNA gene database should match this regular expression:

Example CURIE

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for greengenes.

Registry Name Metaprefix External Prefix
Identifiers.org miriam greengenes
Name-to-Thing n2t greengenes
National Center for Biotechnology Information Registry ncbi Greengenes
Prefix Commons prefixcommons GREENGENES

Providers are various services that resolve CURIEs to URLs. The example CURIE greengenes:100000 is used to demonstrate the provides available for greengenes. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
16S rRNA gene database greengenes http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=100000
Bioregistry bioregistry https://bioregistry.io/greengenes:100000
Identifiers.org miriam https://identifiers.org/greengenes:100000
Name-to-Thing n2t https://n2t.net/greengenes:100000