appears_in: []
contact:
  email: GLAndersen@lbl.gov
  name: Gary L Andersen
  orcid: 0000-0002-1618-9827
depends_on: []
deprecated: false
description: A 16S rRNA gene database which provides chimera screening, standard alignment,
  and taxonomic classification using multiple published taxonomies.
example: '100000'
example_extras: []
homepage: http://greengenes.lbl.gov/
keywords:
- genetics
- life science
- rna
mappings:
  biocontext: GREENGENES
  fairsharing: FAIRsharing.bpxgb6
  integbio: nbdc01824
  miriam: greengenes
  n2t: greengenes
  ncbi: Greengenes
  prefixcommons: greengenes
  re3data: r3d100010549
name: 16S rRNA gene database
namespace_in_lui: false
pattern: ^\d+$
preferred_prefix: greengenes
prefix: greengenes
providers:
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/greengenes:$1
publications:
- doi: 10.1128/aem.03006-05
  pmc: PMC1489311
  pubmed: '16820507'
  title: Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible
    with ARB
  year: 2006
- doi: 10.1128/AEM.03006-05
  title: Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible
    with ARB.
synonyms: []
uri_format: http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=$1
