A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies.

Prefix

greengenes

Keywords

genetics life science rna

Links

Homepage

Contact

Gary L Andersen   0000-0002-1618-9827

Pattern for Local Unique Identifiers

Local identifiers in 16S rRNA gene database should match this regular expression:
^\d+$

Example Local Unique Identifier

100000   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from 16S rRNA gene database should match this regular expression:
^greengenes:\d+$

Example CURIE

greengenes:100000

Publications

• 2006 Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
• Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 4 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE greengenes:100000 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Additional providers curated in the Bioregistry are listed here.