A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies.

Prefix

greengenes

Keywords

genome/gene rna sequence taxonomy

License

CC

Links

Homepage

Publications

2006 Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

Pattern for Local Unique Identifiers

Local unique identifiers in GreenGenes should match this regular expression:
^\d+$

Example Local Unique Identifier

100000   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from GreenGenes should match this regular expression:
^greengenes:\d+$

Example CURIE

greengenes:100000

Contact

Missing Contact

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 7 mappings to external registries with 3 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 100000 is used to demonstrate the providers available for GreenGenes. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.