{"prefix":"cgd","name":"Candida Genome Database","description":"The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products.","pattern":"^CAL\\d{7}$","uri_format":"http://www.candidagenome.org/cgi-bin/locus.pl?dbid=$1","providers":[{"code":"bio2rdf","name":"Bio2RDF","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","uri_format":"http://bio2rdf.org/cgd:$1"}],"homepage":"http://www.candidagenome.org/","contact":{"name":"Gavin Sherlock","orcid":"0000-0002-1692-4983","email":"gsherloc@stanford.edu"},"example":"CAL0003079","example_extras":[],"deprecated":false,"mappings":{"biocontext":"CGD","go":"CGD","integbio":"nbdc00391","miriam":"cgd","n2t":"cgd","ncbi":"CGD","prefixcommons":"cgd","re3data":"r3d100010617","uniprot":"DB-0126"},"synonyms":[],"keywords":["bibliography/documents","dna","eukaryotic","genome","genome/gene","health/disease","interaction/pathway","nucleotide","organism-specific databases","protein","repository","sequence"],"publications":[{"pubmed":"27738138","doi":"10.1093/nar/gkw924","pmc":"PMC5210628","title":"The Candida Genome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data","year":2016},{"pubmed":"22064862","doi":"10.1093/nar/gkr945","pmc":"PMC3245171","title":"The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata","year":2011},{"pubmed":"19808938"},{"pubmed":"19577928"},{"pubmed":"19465905"},{"pubmed":"17090582"},{"pubmed":"16879419"},{"pubmed":"15608216","doi":"10.1093/nar/gki003","pmc":"PMC539957","title":"The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information","year":2005}],"appears_in":[],"depends_on":[],"namespace_in_lui":false,"preferred_prefix":"cgd"}