HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein.

Prefix

hssp

Keywords

clustering protein sequence

Links

Homepage

Publications

1996 The HSSP database of protein structure-sequence alignments

1994 The HSSP database of protein structure-sequence alignments

Pattern for Local Unique Identifiers

Local unique identifiers in Homology-derived Secondary Structures of Proteins Database should match this regular expression:
^\w{4}$

Example Local Unique Identifier

102l   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Homology-derived Secondary Structures of Proteins Database should match this regular expression:
^hssp:\w{4}$

Example CURIE

hssp:102l

Contact

Chris Sander   0000-0001-6059-6270   sanderlab

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 5 mappings to external registries with 1 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 102l is used to demonstrate the providers available for Homology-derived Secondary Structures of Proteins Database. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.