appears_in: []
contact:
  email: chris@sanderlab.org
  name: Chris Sander
  orcid: 0000-0001-6059-6270
depends_on: []
deprecated: false
description: HSSP (homology-derived structures of proteins) is a derived database
  merging structural (2-D and 3-D) and sequence information (1-D). For each protein
  of known 3D structure from the Protein Data Bank, the database has a file with all
  sequence homologues, properly aligned to the PDB protein.
example: 102l
example_extras: []
homepage: http://swift.cmbi.kun.nl/swift/hssp/
keywords:
- clustering
- protein
- sequence
mappings:
  biocontext: HSSP
  miriam: hssp
  n2t: hssp
  ncbi: HSSP
  prefixcommons: hssp
name: Database of homology-derived secondary structure of proteins
namespace_in_lui: false
pattern: ^\w{4}$
preferred_prefix: hssp
prefix: hssp
providers:
- code: CURATOR_REVIEW
  description: HSSP at CMBI
  homepage: ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/
  name: HSSP at CMBI
  uri_format: ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/$1.hssp.bz2
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/hssp:$1
publications:
- doi: 10.1093/nar/24.1.201
  pmc: PMC145595
  pubmed: '8594579'
  title: The HSSP database of protein structure-sequence alignments
  year: 1996
- pmc: PMC308328
  pubmed: '7937066'
  title: The HSSP database of protein structure-sequence alignments
  year: 1994
synonyms: []
uri_format: ftp://ftp.embl-heidelberg.de/pub/databases/protein_extras/hssp/$1.hssp.bz2
