GenBank ® is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences (Nucleic Acids Research, 2013 Jan;41(D1):D36-42).
genbankA summary of the relations in the Bioregistry schema can be found here.
The following resources share a URI format string with genbank:
ncbigi
When generating an extended prefix map, their respective CURIE prefixes and URI
prefixes are merged into the record for genbank.
If you believe that these are distinct semantic spaces and should not be merged,
please open a new issue on the Bioregistry issue tracker
for discussion.
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 8 mappings to external registries with 6 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
GenBank
|
|
| CHEMINF | cheminf |
000304
|
|
|
EDAM
|
edam |
2292
|
|
GO
|
go |
GenBank
|
|
Integbio
|
integbio |
nbdc00276
|
|
|
Prefix Commons
|
prefixcommons |
genbank
|
|
re3data
|
re3data |
r3d100010528
|
|
|
UniProt
|
uniprot |
DB-0028
|
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier U49845 is used to demonstrate the providers
available for GenBank. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| GenBank | genbank |
https://www.ncbi.nlm.nih.gov/nucleotide/U49845 |
| Bioregistry | bioregistry |
https://bioregistry.io/genbank:U49845 |
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/genbank:U49845 |