HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein.
hssp
Local identifiers in Homology-derived Secondary Structures of Proteins Database should match this
regular expression:
^\w{4}$
Compact URIs (CURIEs) constructed from Homology-derived Secondary Structures of Proteins Database should match
this regular expression:
^hssp:\w{4}$
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 5 mappings to external registries with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
HSSP
|
|
Identifiers.org
|
miriam |
hssp
|
|
N2T
|
n2t |
hssp
|
|
|
NCBI
|
ncbi |
HSSP
|
|
|
Prefix Commons
|
prefixcommons |
hssp
|
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 102l is used to demonstrate the providers
available for Homology-derived Secondary Structures of Proteins Database. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| Homology-derived Secondary Structures of Proteins Database | hssp |
ftp://ftp.embl-heidelberg.de/pub/databases/protein_extras/hssp/102l.hssp.bz2 |
| Bioregistry | bioregistry |
https://bioregistry.io/hssp:102l |
| Identifiers.org | miriam |
https://identifiers.org/hssp:102l |
| Name-to-Thing | n2t |
https://n2t.net/hssp:102l |
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| HSSP at CMBI | |
ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/102l.hssp.bz2 |
| Bio2RDF | bio2rdf |
http://bio2rdf.org/hssp:102l |