The Rouge protein database contains results from sequence analysis of novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project.
- Prefix
rouge- Keywords
- bioresource cdna/est dna genome/gene organism-specific databases protein rna sequence
- Links
- Homepage
- Publications
- https://bioregistry.io/pubmed:15449545
- https://bioregistry.io/pubmed:15368895
- https://bioregistry.io/pubmed:15188409
- 2004 HUGE: a database for human KIAA proteins, a 2004 update integrating HUGEppi and ROUGE
- https://bioregistry.io/pubmed:14621295
- https://bioregistry.io/pubmed:12693553
- https://bioregistry.io/pubmed:12465718
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in Rodent Unidentified Gene-Encoded Large Proteins should match this regular expression:
^m\w+$ - Example Local Unique Identifier
- mKIAA4200 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Rodent Unidentified Gene-Encoded Large Proteins should match this regular expression:
^rouge:m\w+$ - Example CURIE
- rouge:mKIAA4200
Contacts
- Contact
-
Osamu Ohara
0000-0002-3328-9571
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 6 mappings to external registries with 3 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
ROUGE
|
|
Integbio
|
integbio |
nbdc00672
|
|
Identifiers.org
|
miriam |
rouge
|
|
N2T
|
n2t |
rouge
|
|
Prefix Commons
|
prefixcommons |
rouge
|
|
UniProt
|
uniprot |
DB-0092
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier mKIAA4200 is used to demonstrate the providers
available for Rodent Unidentified Gene-Encoded Large Proteins. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| Rodent Unidentified Gene-Encoded Large Proteins | rouge |
https://www.kazusa.or.jp/rouge/gfpage/mKIAA4200 |
| Bioregistry | bioregistry |
https://bioregistry.io/rouge:mKIAA4200 |
| Identifiers.org | miriam |
https://identifiers.org/rouge:mKIAA4200 |
| Name-to-Thing | n2t |
https://n2t.net/rouge:mKIAA4200 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/rouge:mKIAA4200 |