The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram.

Prefix

smpdb

Alternative Prefixes

SMP

Keywords

chemical human life science metabolite pathway

Links

Homepage

Contact

David S. Wishart   0000-0002-3207-2434   DavidWishartLab

Pattern for Local Unique Identifiers

Local identifiers in Small Molecule Pathway Database should match this regular expression:
^SMP\d+$

Example Local Unique Identifier

SMP0000219   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Small Molecule Pathway Database should match this regular expression:
^smpdb:SMP\d+$

Example CURIE

smpdb:SMP0000219

Publications

• 2013 SMPDB 2.0: big improvements to the Small Molecule Pathway Database
• 2009 SMPDB: The Small Molecule Pathway Database
• SMPDB: The Small Molecule Pathway Database.

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for this resource with 6 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier SMP0000219 is used to demonstrate the providers available for Small Molecule Pathway Database. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.