appears_in: []
contact:
  email: david.wishart@ualberta.ca
  github: DavidWishartLab
  name: David S. Wishart
  orcid: 0000-0002-3207-2434
depends_on: []
deprecated: false
description: The Small Molecule Pathway Database (SMPDB) contains small molecule pathways
  found in humans, which are presented visually. All SMPDB pathways include information
  on the relevant organs, subcellular compartments, protein cofactors, protein locations,
  metabolite locations, chemical structures and protein quaternary structures. Accompanying
  data includes detailed descriptions and references, providing an overview of the
  pathway, condition or processes depicted in each diagram.
example: SMP0000219
example_extras: []
homepage: https://smpdb.ca/
keywords:
- biopax
- chemical
- human
- image/movie
- interaction/pathway
- metabolite
- pathway
- protein
- sbml
mappings:
  biocontext: SMPDB
  biolink: PathWhiz
  edam: '2659'
  integbio: nbdc00908
  miriam: smpdb
  n2t: smpdb
  pathguide: '311'
  prefixcommons: smpdb
name: Small Molecule Pathway Database
namespace_in_lui: false
pattern: ^SMP\d+$
preferred_prefix: smpdb
prefix: smpdb
providers:
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/smpdb:$1
publications:
- doi: 10.1093/nar/gkt1067
  pmc: PMC3965088
  pubmed: '24203708'
  title: 'SMPDB 2.0: big improvements to the Small Molecule Pathway Database'
  year: 2013
- doi: 10.1093/nar/gkp1002
  pmc: PMC2808928
  pubmed: '19948758'
  title: 'SMPDB: The Small Molecule Pathway Database'
  year: 2009
synonyms:
- SMP
uri_format: https://smpdb.ca/view/$1
