appears_in: []
contact:
  email: yperez@ebi.ac.uk
  github: ypriverol
  name: Yasset Perez-Riverol
  orcid: 0000-0001-6579-6941
depends_on: []
deprecated: true
description: The PRIDE PRoteomics IDEntifications database is a centralized, standards
  compliant, public data repository that provides protein and peptide identifications
  together with supporting evidence. This collection references experiments and assays.
download_owl: https://raw.githubusercontent.com/PRIDE-Utilities/pride-ontology/master/pride_cv.owl
example: '0000006'
example_extras: []
homepage: https://github.com/PRIDE-Utilities/pride-ontology
keywords:
- ontology
- protein
- proteomic databases
- repository
license: http://www.ebi.ac.uk/Information/termsofuse.html
logo: https://www.proteomexchange.org/pride_logo.png
mappings:
  aberowl: PRIDE
  biocontext: PRIDE
  integbio: nbdc00312
  miriam: pride
  n2t: pride
  ols: pride
  prefixcommons: pride
  re3data: r3d100010137
  uniprot: DB-0130
name: Proteomics Identification Database Ontology
namespace_in_lui: false
owners:
- name: European Bioinformatics Institute
  ror: 02catss52
pattern: ^\d{7}$
preferred_prefix: pride
prefix: pride
providers:
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/pride:$1
publications:
- doi: 10.1093/nar/gkae1011
  pubmed: '39494541'
- doi: 10.1093/nar/gkab1038
  pmc: PMC8728295
  pubmed: '34723319'
  title: 'The PRIDE database resources in 2022: a hub for mass spectrometry-based
    proteomics evidences'
  year: 2022
- doi: 10.1093/nar/gky1106
  pmc: PMC6323896
  pubmed: '30395289'
  title: 'The PRIDE database and related tools and resources in 2019: improving support
    for quantification data'
  year: 2019
- doi: 10.1093/nar/gkv1145
  pmc: PMC4702828
  pubmed: '26527722'
  title: 2016 update of the PRIDE database and its related tools
  year: 2015
- doi: 10.1002/pmic.201400120
  pubmed: '25047258'
  title: How to submit MS proteomics data to ProteomeXchange via the PRIDE database
  year: 2014
- doi: 10.1038/nbt.2839
  pmc: PMC3986813
  pubmed: '24727771'
  title: ProteomeXchange provides globally coordinated proteomics data submission
    and dissemination
  year: 2014
- doi: 10.1093/nar/gks1262
  pmc: PMC3531176
  pubmed: '23203882'
  title: 'The PRoteomics IDEntifications (PRIDE) database and associated tools: status
    in 2013'
  year: 2012
- pubmed: '19906717'
- doi: 10.1002/0471250953.bi1308s21
  pubmed: '18428683'
  title: Using the Proteomics Identifications Database (PRIDE)
  year: 2008
- doi: 10.1093/nar/gkm1021
  pmc: PMC2238846
  pubmed: '18033805'
  title: 'PRIDE: new developments and new datasets'
  year: 2007
- doi: 10.1093/nar/gkj138
  pmc: PMC1347500
  pubmed: '16381953'
  title: 'PRIDE: a public repository of protein and peptide identifications for the
    proteomics community'
  year: 2006
- doi: 10.1002/pmic.200401303
  pubmed: '16041671'
  title: 'PRIDE: the proteomics identifications database'
  year: 2005
repository: https://github.com/PRIDE-Utilities/pride-ontology
synonyms: []
uri_format: http://purl.obolibrary.org/obo/PRIDE_$1
version: '2026-06-01'
